CONREAL

CONREAL ALIGNMENT

                  10        20                                                                                
seq1      cgtcatggcgcgagccctcctactc---------------------------------------------------------------------------
           |    |  |  || |                                                                                    
seq2      ggatgagaaggaagacaatgggaggtggatgggagtatgacacacaggaaggcacaaaggaacacataagtggtggtaactattattgattacaatattt
                  10        20        30        40        50        60        70        80        90       100

                                                                                                              
seq1      ----------------------------------------------------------------------------------------------------
                                                                                                              
seq2      cagtgatcccagcgccaccttccacattaccgggtggggtctttactcattacaggggcaaatccatactaaaaaactcactgtgtgctggggtgtagcg
                 110       120       130       140       150       160       170       180       190       200

                                                                                                              
seq1      ----------------------------------------------------------------------------------------------------
                                                                                                              
seq2      cgatcagcacgcactttatccagcacacaggcagaggggacagatgagaccgggtatggttgagggtgcattttctaaggaggaaacggaaggataggaa
                 210       220       230       240       250       260       270       280       290       300

                                                                                                              
seq1      ----------------------------------------------------------------------------------------------------
                                                                                                              
seq2      gattaaagatgttgagttgcatactaagtgggtggtgaggcgagccctcatctgagcccaataacagccaattaccctaattatcaacggcgccccagga
                 310       320       330       340       350       360       370       380       390       400

                                                                                                              
seq1      ----------------------------------------------------------------------------------------------------
                                                                                                              
seq2      cgaggcctagaactgagcgccttgacccaagtcatctcgctccgcctcagcaatgacctgccataaggctcgatcacaccccacttctccaccccgaggc
                 410       420       430       440       450       460       470       480       490       500

                                                                                                              
seq1      ----------------------------------------------------------------------------------------------------
                                                                                                              
seq2      cacggcgtgccgctcacccccgagcctgggtccgggtccggggcccacagctccgccaccatctcggtgtgcagaaactcgaatagcaccgcgtccgcca
                 510       520       530       540       550       560       570       580       590       600

                                                   30                                       40        50      
seq1      --------------------------------------CGGCTTCCATTG-------------------------------GTGTTTTagactagccccg
                                                ||||| ||||||                               ||| |      |||| |||
seq2      tacgccgcctcgcgaccctcacgcctggccaacgcttcCGGCTCCCATTGgtcagctcgggaggtaggcccgatctgattgGTGATCCtatttagctccg
                 610       620       630       640       650       660       670       680       690       700

            60        70        80        90       100       110           120       130       140       150  
seq1      cctccccgccccggactcaggtggtgtgcgcgtgagcctgggacaCTAGGGGGCGGGCCTACg----CCTTCTCTGGccACATGTGGCAACATCTTCTGC
          ||| |                                        | ||| |||||| | ||     || |  || | |     ||  ||||||||| ||
seq2      cctgcttcttgaaag------------------------------CCAGGAGGCGGGTCCACcgagcCCCTTCCTTGgcCGCGCTGTTAACATCTTCCGC
                 710                                     720       730       740       750       760       770

               160       170       180       190       200       210       220       230       240       250  
seq1      TCTTACTGCCGtcCCTTCCCTaTTTCCGggttctcgagcATTCCTATTGGCCAAATTACTGGttacacgtgacatactcggcttttaaaatccctattgg
           ||| || |  | || |||||  | ||| ||  |||     ||| ||||||  | |  ||| || |        | |  |  |   ||||      ||  
seq2      CCTTTCTTCGCttCCCTCCCTgCTCCCGagtcttcgga-CATCCAATTGGCTGAGTCTCTGAttcctgtgagggtccaagattaaaaaaaataaatttac
                 780       790       800        810       820       830       840       850       860       87

               260       270       280       290                                  300       310       320     
seq1      tccactccagactttcctcgtcgcacaacctggaagagccggcc---------------------------CAGCTGTTTCTCTATTGGCGGTTCCTCCA
           |  |    |   ||   |     |||      || |                                   | | | ||  ||||||||  |  |||  
seq2      gcgtcaaacggaattttcctaaatacataagcaaataaataaataaacccacactacggaagcgacttgtcTAACCGCTTTCCTATTGGCCATAACTCGG
          0       880       890       900       910       920       930       940       950       960       97

            330       340       350       360       370       380       390       400       410       420     
seq1      TTCATGTGACTCTTctgcacgctcactcaaagctgatgctgagaacttgcttcctgattggtagccgggcgaatccacgtgacttggccgctaatgcccg
           ||| ||||| || |   |  |   ||||                                                                       
seq2      CTCACGTGACGCTGcgagagaccggctcactt--------------------------------------------------------------------
          0       980       990      1000                                                                     

            430       440       450       460       470       480       490       500       510       520     
seq1      cccaacccgctcccctattggttgaaatcacagcccttcagctgccacggtgagaacgcagcactcgggttaggaagcggatctcgcaagctccgagcgt
                                                                                                              
seq2      ----------------------------------------------------------------------------------------------------
                                                                                                              

            530       540       550       560       570       580       590       600       610       620     
seq1      cagctgccgggtacggtctttggcgttagcgcttctcccatcccatgagtgcccccagcagagtccagtcggactgtcatcctttctgcgactctggcgc
                                                                                                              
seq2      ----------------------------------------------------------------------------------------------------
                                                                                                              

            630       640       650       660       670       680       690       700       710       720     
seq1      tggtcccgagcagctcacgggcccgtgtgcttccgggtctgagattggcatggtggaccaggtggagggtgtggcctctactaggaggcaaattcgtaaa
                                                                                                              
seq2      ----------------------------------------------------------------------------------------------------
                                                                                                              

            730       740       750       760       770       780       790       800       810       820     
seq1      gacctcggcttgggactccgggaactcgggccccagatccttgttcgagctggtcttcagtttccccatctgtacgctgaagagcctggggtccagtaac
                                                                                                              
seq2      ----------------------------------------------------------------------------------------------------
                                                                                                              

            830       840       850       860       870       880       890       900       910       920     
seq1      ccccatcatcacccagtttacagaagaggaaactgaggcccagacggggagcagctgacaccaagtcgttaagagaatcagcgaaggggctgggaatcca
                                                                                                              
seq2      ----------------------------------------------------------------------------------------------------
                                                                                                              

            930       940       950       960       970       980       990      1000 
seq1      ggacctgcgccttttacccaccgcggcgccggtctcacgtgcagtcccttcgctcttctcccctagttcggtgcc-
                                                                                      
seq2      ---------------------------------------------------------------------------C
                                                                                      

CONREAL ALIGNED HITS

Matrix
Identity
Seq1 from
Seq1 to
Seq2 from
Seq2 to
Strand
Score1
Score2
Rel.Score1
Rel.Score2
Factor
Found by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M00644*
59.46
26
32
639
645
1
7.026
5.546
0.87
0.80
Pro only
C only
MA0095
58.33
31
36
644
649
1
6.225
5.236
0.89
0.84
Yin-Yang
C only
M00468*
56.76
31
37
644
650
2
4.840
6.111
0.81
0.88
Pro only
C only
M00396
59.46
38
44
682
688
1
4.063
4.063
0.83
0.83
En-1 
C only
M00469*
53.85
102
110
716
724
2
4.368
6.425
0.80
0.87
Pro only
C only
MA0003
53.85
102
110
716
724
2
4.368
6.425
0.80
0.87
AP2alpha
C only
M00807*
53.66
103
113
717
727
1
8.966
6.644
0.87
0.81
Pro only
C only
MA0039
55.00
104
113
718
727
1
5.228
5.483
0.81
0.82
Gklf
C only
M00196
53.49
104
116
718
730
1
13.985
12.167
0.93
0.89
Sp1 
C only
M00932*
53.49
104
116
718
730
1
13.863
11.412
0.93
0.88
Pro only
C only
M00255
52.27
104
117
718
731
1
13.018
12.167
0.92
0.91
GC box 
C only
M00733*
51.11
104
118
718
732
2
8.076
8.487
0.81
0.82
Pro only
C only
M00716*
55.26
105
112
719
726
1
7.759
5.783
0.91
0.82
Pro only
C only
M00933*
52.50
105
114
719
728
2
12.418
9.829
0.94
0.87
Pro only
C only
M00695*
54.05
106
112
720
726
1
9.502
9.502
0.99
0.99
Pro only
C only
M00649*
52.63
106
113
720
727
1
10.557
6.664
0.94
0.80
Pro only
C only
M00931*
52.50
106
115
720
729
1
13.288
9.813
0.95
0.87
Pro only
C only
M00008
52.50
106
115
720
729
1
9.302
7.838
0.91
0.86
Sp1 
C only
M00272
52.50
107
116
721
730
1
5.226
5.534
0.81
0.82
p53 
C only
M00803*
55.56
108
113
722
727
1
8.243
8.243
0.97
0.97
Pro only
C only
M00986*
55.56
110
115
724
729
1
5.317
6.401
0.88
0.93
Pro only
C only
MA0039
50.00
120
129
738
747
2
5.047
9.038
0.81
0.92
Gklf
C only
M00253
57.89
132
139
750
757
2
3.584
3.199
0.84
0.83
cap 
C only
M00462*
60.00
140
149
758
767
2
4.504
4.431
0.80
0.80
Pro only
C only
M00076
60.00
140
149
758
767
2
6.118
4.879
0.88
0.83
GATA-2 
C only
M00075
60.00
140
149
758
767
2
5.996
4.757
0.87
0.82
GATA-1 
C only
MA0037
61.11
142
147
760
765
2
3.647
3.647
0.80
0.80
GATA-3
C only
MA0035
61.11
142
147
760
765
2
5.784
5.784
0.93
0.93
GATA-1
C only
M00971*
60.53
142
149
760
767
1
5.302
5.302
0.80
0.80
Pro only
C only
M00253
60.53
142
149
760
767
1
4.244
4.244
0.87
0.87
cap 
C only
M00655*
59.46
142
148
760
766
1
6.158
6.158
0.84
0.84
Pro only
C only
MA0036
60.00
143
147
761
765
2
5.559
5.559
0.94
0.94
GATA-2
C only
MA0103
58.33
143
148
761
766
1
4.388
4.388
0.81
0.81
deltaEF1
C only
M00499*
60.53
144
151
762
769
1
6.875
6.234
0.94
0.91
Pro only
C only
M00496*
60.53
144
151
762
769
1
4.242
5.558
0.81
0.87
Pro only
C only
M00497*
60.53
144
151
762
769
1
4.422
6.144
0.83
0.91
Pro only
C only
MA0080
61.11
146
151
764
769
2
5.628
8.711
0.87
1.00
SPI-1
C only
MA0098
61.11
146
151
764
769
1
3.822
7.797
0.82
1.00
c-ETS
C only
M00658*
60.53
146
153
764
771
2
7.804
7.737
0.87
0.87
Pro only
C only
MA0081
59.46
147
153
765
771
2
6.232
5.707
0.86
0.84
SPI-B
C only
MA0080
69.44
154
159
772
777
2
4.391
4.721
0.82
0.83
SPI-1
C only
MA0080
69.44
158
163
776
781
2
4.385
4.897
0.82
0.84
SPI-1
C only
M00649*
65.79
166
173
784
791
2
7.389
11.282
0.83
0.96
Pro only
C only
MA0098
63.89
168
173
786
791
1
3.658
3.658
0.81
0.81
c-ETS
C only
M00986*
63.89
168
173
786
791
2
5.392
5.768
0.88
0.90
Pro only
C only
MA0098
61.11
175
180
793
798
1
7.797
3.822
1.00
0.82
c-ETS
C only
MA0098
58.33
192
197
809
814
1
5.977
5.896
0.92
0.91
c-ETS
C only
M00287
54.35
192
207
809
824
2
11.577
12.046
0.89
0.89
NF-Y 
C only
MA0078
56.41
195
203
812
820
1
7.197
5.954
0.86
0.82
SOX17
C only
M00185
53.66
195
205
812
822
2
10.383
8.635
0.90
0.85
NF-Y 
C only
M00254
52.38
196
207
813
824
2
11.074
8.902
0.92
0.88
CCAAT box 
C only
M00775*
51.16
196
208
813
825
2
10.795
10.425
0.91
0.90
Pro only
C only
M00253
50.00
207
214
824
831
2
4.068
4.193
0.86
0.87
cap 
C only
MA0100
52.63
297
304
941
948
2
5.172
6.947
0.81
0.86
c-MYB_1
C only
M00497*
55.26
301
308
945
952
1
5.011
4.223
0.86
0.82
Pro only
C only
M00287
58.70
304
319
948
963
2
7.875
10.407
0.82
0.86
NF-Y 
C only
MA0078
56.41
307
315
951
959
1
7.197
7.197
0.86
0.86
SOX17
C only
M00395
56.41
307
315
951
959
1
3.630
5.990
0.80
0.93
HOXA3 
C only
M00775*
62.79
308
320
952
964
2
7.347
8.502
0.82
0.85
Pro only
C only
M00254
61.90
308
319
952
963
2
5.836
10.535
0.81
0.91
CCAAT box 
C only
M00806*
63.83
309
325
953
969
2
8.622
9.290
0.82
0.84
Pro only
C only
MA0109
65.79
316
323
960
967
1
4.547
5.480
0.80
0.84
RUSH1-alfa
C only
M00985*
59.09
324
337
968
981
1
8.545
13.548
0.81
0.92
Pro only
C only
M00122
59.09
324
337
968
981
1
6.810
8.849
0.83
0.88
USF 
C only
M00122
59.09
324
337
968
981
2
6.810
8.849
0.83
0.88
USF 
C only
MA0067
60.53
325
332
969
976
1
5.373
4.605
0.85
0.82
Pax-2
C only
M01008*
58.97
325
333
969
977
2
6.838
9.407
0.85
0.92
Pro only
C only
M00220
56.10
325
335
969
979
1
8.439
12.721
0.81
0.92
SREBP-1 
C only
M00220
56.10
326
336
970
980
2
8.158
12.957
0.81
0.92
SREBP-1 
C only
M00187
55.00
326
335
970
979
2
6.983
10.339
0.82
0.93
USF 
C only
MA0093
56.76
327
333
971
977
2
7.243
10.923
0.85
0.98
USF
C only
M00240
56.76
327
333
971
977
1
6.785
6.785
0.85
0.85
Nkx2-5 
C only
M01029*
55.26
327
334
971
978
1
11.893
10.351
1.00
0.95
Pro only
C only
M00217
55.26
327
334
971
978
1
7.084
9.645
0.86
0.96
USF 
C only
M00217
55.26
327
334
971
978
2
7.967
9.645
0.89
0.96
USF 
C only
MA0058
55.00
327
336
971
980
2
8.345
9.621
0.86
0.89
Max
C only
MA0004
55.56
328
333
972
977
1
6.112
10.351
0.83
1.00
ARNT
C only
MA0004
55.56
328
333
972
977
2
6.112
10.351
0.83
1.00
ARNT
C only
MA0104
55.56
328
333
972
977
1
6.819
10.533
0.86
1.00
n-MYC
C only
MA0104
55.56
328
333
972
977
2
7.418
10.533
0.88
1.00
n-MYC
C only
M00726*
55.56
328
333
972
977
1
6.970
8.133
0.94
1.00
Pro only
C only
M00726*
55.56
328
333
972
977
2
4.701
8.133
0.82
1.00
Pro only
C only
MA0103
55.56
328
333
972
977
2
4.633
6.156
0.82
0.88
deltaEF1
C only
MA0093
54.05
328
334
972
978
1
7.800
10.923
0.87
0.98
USF
C only
M01008*
53.85
328
336
972
980
1
7.495
10.853
0.87
0.97
Pro only
C only
MA0067
52.63
329
336
973
980
2
6.078
8.225
0.88
0.97
Pax-2
C only
MA0067
52.63
330
337
974
981
1
4.474
5.006
0.82
0.84
Pax-2
C only
MA0089
50.00
330
335
974
979
1
5.300
6.040
0.85
0.88
TCF11-MafG
C only
M00925*
53.85
331
339
975
983
1
7.949
5.695
0.88
0.80
Pro only
C only
M00801*
50.00
331
336
975
980
2
5.524
9.044
0.85
0.99
Pro only
C only

LAGAN

LAGAN ALIGNMENT

                  10        20        30        40        50        60        70        80        90       100
seq1      cgtcatggcgcgagccctcctactccggcttccattggtgttttagactagccccgcctccccgccccggactcaggtggtgtgcgcgtgagcctgggac
           |    |  |  || |                                                          | | |  |||   | |||  ||  ||
seq2      ggatgagaaggaagaca---------------------------------------------------------atgggaggtggatgggagtatgacac
                  10                                                                 20        30        40   

                 110       120       130       140                         150       160       170       180  
seq1      actagggggcgggcctacgccttctctggccacatgtggcaacatct------------------tctgctcttactgccgtCCCTTCCCTATTTccggg
          ||  |  |||         |          || | ||||    | ||                  || |   |  | ||    ||||||  ||| |||||
seq2      acaggaaggcacaaaggaaca---------cataagtggtggtaactattattgattacaatatttcagtgatcccagcgccACCTTCCACATTAccggg
               50        60                 70        80        90       100       110       120       130    

               190       200       210       220       230       240       250                      260       
seq1      ttctcgagcattcctattggccAAATTACTGGTTacacgtgacatactcggcttttaaaatccctattggtc---------------cactccagacttt
          |                 ||     |||||  ||||| | |  |  |    ||   ||| || || |  |                 ||   |  |||||
seq2      t-----------------ggggTCTTTACTCATTacaggggcaaatccatactaaaaaactcactgtgtgctggggtgtagcgcgatcagcacgcacttt
                              140       150       160       170       180       190       200       210       

          270       280       290       300       310       320       330                                     
seq1      cctcgtcgcacaacctggaagagccggcccagctgtttctctattggcggttcctccattcatgtga---------------------------------
             |  | ||||  | |   |  | |      | |  | |   |||  ||| | |    | | | |                                  
seq2      atccagcacacaggcagaggggacagatgagaccgggtatg-gttgagggtgcattttctaaggaggaaacggaaggataggaagattaaagatgttgag
          220       230       240       250        260       270       280       290       300       310      

                                         340       350       360       370       380       390       400      
seq1      ----------------------------ctcttctgcacgctcactcaaagctgatgctgagaacttgcttcctgattggtagccgggcgaatccacgtg
                                      | ||  |    || || | | |||  ||      | | |  ||    |  |    || ||   |  |     
seq2      ttgcatactaagtgggtggtgaggcgagccctcatctgagcccaataacagccaatt-----accctaattatcaacggcgccccaggacgaggcctaga
           320       330       340       350       360       370            380       390       400       410 

           410       420       430       440                       450       460                470           
seq1      acttggccgctaatgcccgcccaacccgctcccct----------------attggttgaaatcacagccc---------ttcagctgccacggtgag--
          |||  ||  ||    ||    || | |||||| |                 ||  |     |||||| |||           | |  ||||||| | |  
seq2      actgagcgccttgacccaagtcatctcgctccgcctcagcaatgacctgccataaggctcgatcacaccccacttctccaccccgaggccacggcgtgcc
                420       430       440       450       460       470       480       490       500       510 

            480       490       500       510       520       530       540       550       560       570     
seq1      ----aacgcagcactcgggttaggaagcggatctcgcaagctccgagcgtcagctgccgggtacggtctttggcgttagcgcttctcccatcccatgagt
              | | | |  |  ||||  ||   |||  | | || ||||||          |  | | |    ||        | ||| ||  |||| |   |  |
seq2      gctcacccccgagcctgggtccgggtccggggcccaca-gctccgccaccatctcggtgtgcagaaactcgaatagcaccgcgtccgccatacgccgcct
                520       530       540        550       560       570       580       590       600       610

                580       590       600       610       620       630       640                  650       660
seq1      ----gcccccagcagagtccagtcggactgtcatcctttctgcgactctggcgctgGTCCCGagcagctca-----------cgggcccgtgtgcttccg
               ||| ||     | |||      | | |  || ||   |  ||| || | | | ||||| | | |               |  |||  ||||||  
seq2      cgcgaccctcacgcctggccaacgcttccggctcccattggtcagctcgggaggtaGGCCCGatctgattggtgatcctatttagctccgcctgcttctt
                 620       630       640       650       660       670       680       690       700       710

                 670       680       690       700       710       720       730       740            750     
seq1      ggtctgagattggcatggtggaccaggtggagggtgtggcctctactaggaggcaaattcgtaaagacctcggcttgggactccgggaa-----ctcggg
          |                                            | |||||||   | |    || ||    |||||     | |  |      || | 
seq2      gaaa----------------------------------------gccaggaggcgggtccaccgagccccttccttggccgcgctgttaacatcttccgc
                                                         720       730       740       750       760       770

            760       770       780       790       800       810       820       830       840       850     
seq1      ccccagatccttgttcgagctggtcttcagtttccccatctgtacgctgaagagcctggggtccagtaacccccatcatcacccagtttacagaagagga
          ||     ||  |   |   ||| ||   ||| | |  |  |  |    |  ||| ||         | |  ||  | |    |||   |  | || |  |
seq2      cctttcttcgcttccctccctgctcccgagtcttcggacatccaattggctgagtctc--------tgattcctgtgagggtccaagattaaaaaaaata
                 780       790       800       810       820               830       840       850       860  

            860       870       880       890       900       910       920       930       940               
seq1      aactgaggcccagacggggagcagctgacaccaagtcgttaagagaatcagcgaaggggctgggaatccaggacctgcgccttttacc------------
          || | | ||    |  || |    |     | || |   ||||  ||| |   ||    |    | | | | | |  |   | | |||            
seq2      aatttacgcgtcaaacggaattttc-----ctaaatacataagcaaataaataaataaacccacactacggaagcgacttgtctaaccgctttcctattg
               870       880            890       900       910       920       930       940       950       

                                   950        960                 970       980       990              1000
seq1      ---------------------caccgcg-gcgccggtctcacgt----------gcagtcccttcgctcttctcccctag--------ttcggtgcc
                               | | ||| | | | | ||||| |          || | ||| | |  ||     ||| |         || |||||
seq2      gccataactcggctcacgtgacgctgcgagagaccggctcacttccgccaggcagcggaccccttgggctcggagcctcggagacccgctccgtgcc
          960       970       980       990      1000      1010      1020      1030      1040      1050    

LAGAN ALIGNED HITS

Matrix
Identity
Seq1 from
Seq1 to
Seq2 from
Seq2 to
Strand
Score1
Score2
Rel.Score1
Rel.Score2
Factor
Found by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M00496*
52.63
165
172
117
124
1
5.438
4.321
0.86
0.82
Pro only
L M
M00497*
52.63
165
172
117
124
1
7.250
5.348
0.96
0.87
Pro only
L M
M00499*
52.63
165
172
117
124
1
5.727
5.596
0.89
0.88
Pro only
L M
M00500*
52.63
165
172
117
124
1
8.262
7.040
0.96
0.91
Pro only
L M
M00704*
55.56
166
171
118
123
2
5.117
5.117
0.82
0.82
Pro only
L M
M00971*
52.63
166
173
118
125
1
6.109
6.702
0.83
0.85
Pro only
L M
MA0039
50.00
166
175
118
127
2
8.425
6.082
0.90
0.84
Gklf
L M
M00658*
50.00
167
174
119
126
2
6.103
7.704
0.81
0.87
Pro only
L M
MA0080
52.78
167
172
119
124
2
8.579
6.483
0.99
0.91
SPI-1
L M
MA0098
52.78
167
172
119
124
1
5.777
6.300
0.91
0.93
c-ETS
L M
MA0081
51.35
168
174
120
126
2
5.764
6.960
0.84
0.88
SPI-B
L M
M00690*
50.00
169
176
121
128
1
5.863
8.905
0.85
0.97
Pro only
L M
MA0056
52.78
169
174
121
126
2
4.916
4.989
0.81
0.81
MZF_1-4
L M
M00313*
50.00
170
177
122
129
1
4.491
4.766
0.81
0.82
Pro only
L M
M00314*
50.00
170
177
122
129
1
4.587
4.950
0.81
0.83
Pro only
L M
M00315*
50.00
170
177
122
129
1
4.418
4.516
0.81
0.81
Pro only
L M
M00496*
50.00
205
212
140
147
1
4.409
4.162
0.82
0.81
Pro only
L M
MA0032
50.00
209
216
144
151
2
5.238
5.764
0.88
0.90
FREAC-3
L M
M00986*
52.78
628
633
667
672
2
6.604
5.317
0.94
0.88
Pro only
L only

MAVID

MAVID ALIGNMENT

                  10        20        30        40        50        60        70        80        90       100
seq1      cgtcatggcgcgagccctcctactccggcttccattggtgttttagactagccccgcctccccgccccggactcaggtggtgtgcgcgtgagcctgggac
           |    |  |  || |                                                          | | |  |||   | |||  ||  ||
seq2      ggatgagaaggaagac---------------------------------------------------------aatgggaggtggatgggagtatgacac
                  10                                                                 20        30        40   

                 110       120       130            140       150                      160       170       180
seq1      actagggggcgggcctacgccttctctggccacat-----gtggcaacatcttctgctcttact---------------gccgtCCCTTCCCTATTTccg
          ||    ||  ||  | | |        |  |||||     |||| |||   |  || |   | |               ||    ||||||  ||| |||
seq2      ac---aggaaggcacaaag--------gaacacataagtggtggtaactattattgattacaatatttcagtgatcccagcgccACCTTCCACATTAccg
                  50                60        70        80        90       100       110       120       130  

                 190       200       210       220       230       240                  250       260       27
seq1      ggttctcgagcattcctattggccAAATTACTGGTTacacgtgacatactcggcttttaaaatccctat-----------tggtccactccagactttcc
          ||                 |||     |||||  ||||| | |  |  |    ||   ||| || || |           | |  |  ||   ||   | 
seq2      gg-----------------tggggTCTTTACTCATTacaggggcaaatccatactaaaaaactcactgtgtgctggggtgtagcgcgatcagcacgcact
                                140       150       160       170       180       190       200       210     

          0       280       290       300               310       320       330       340       350       360 
seq1      tcgtcgcacaacctggaagagccggcccagctg--------tttctctattggcggttcctccattcatgtgactcttctgcacgctcactcaaagctga
          |  ||   ||  | || ||||  ||  ||| ||        | |   |   || |  |  || |   | |  ||        | |   | | ||    ||
seq2      ttatccagcacacaggcagag--gggacagatgagaccgggtatggttgagggtgcattttctaaggaggaaacggaaggataggaagattaaa----ga
            220       230         240       250       260       270       280       290       300           31

                370       380       390        400                                                      410   
seq1      tgctgagaacttgcttCCTGATTGGtagccg-ggcgaatccacgt-----------------------------------------------gacttggc
          || ||||   |||| | || | |||  |  | |||||  || | |                                               |||  |||
seq2      tgttgag---ttgcatACTAAGTGGgtggtgaggcgagccctcatctgagcccaataacagccaattaccctaattatcaacggcgccccaggacgaggc
          0          320       330       340       350       360       370       380       390       400      

               420                  430       440                         450       460       470       480   
seq1      cgctaa-tgcccgcc-----------caacccgctcccc------------------tattggttgaaaTCACAGCCcttcagctgccacggtgagaacg
          |   || ||  ||||           || | |||||| |                  ||  | | ||   |||  | ||||     ||||   |||  | 
seq2      ctagaactgagcgccttgacccaagtcatctcgctccgcctcagcaatgacctgccataaggctcgatcACACCCCActtc----tccaccccgaggcca
           410       420       430       440       450       460       470       480           490       500  

              490       500       510       520       530       540       550       560       570       580   
seq1      cagcactcgggttaggaagcggatctcgcaagctccgagcgtcagctgccgggtacggtctttggcgttagcgcttctcccatcccatgagtgcccccag
          | ||   | | |                  | | ||||||  | |   |||||| |||     | |   ||| |  |  ||||| |  | ||||      
seq2      cggcgtgccgct-----------------cacccccgagc--ctgggtccgggtccgg----ggcccacagctccgccaccatctc-ggtgtgc-----a
               510                        520         530       540           550       560        570        

              590       600         610       620       630       640       650       660       670       680 
seq1      cagagtccagtcggactg--tcatcctttctgcgactctggcgctggtcccgagcagctcacgggcccgtgtgcttccgggtctgagattggcatggtgg
           | | || | | | || |  ||  || | |  || |||  |||    || ||    ||  ||          |||||||| ||  |           | |
seq2      gaaactcgaatagcaccgcgtccgccatacgccgcctc--gcgaccctcacgcctggccaac----------gcttccggctccca-----------ttg
              580       590       600       610         620       630                 640                  650

                690       700          710       720       730       740             750       760            
seq1      accaggtggagggtgtggcc---tctactaggaggcaaattcgtaaagacctcggcttgggact------cCGGGAACTcgggccccaga------tcct
            ||| | | | |   ||||   |||  | || |      || ||   | ||| || ||   ||      || |||    || || | ||      ||||
seq2      gtcagctcgggaggtaggcccgatctgattggtg-----atcctatttagctccgcctgcttcttgaaagcCAGGAGGCgggtccaccgagccccttcct
                 660       670       680            690       700       710       720       730       740     

           770       780       790       800       810       820       830                                    
seq1      tGTTCGAGCTGGTcttCAGTTTCCccatctgtacgctgaagagcctggggtccagtaacccccatcatca------------------------------
          ||  || |||| |      || | || | | | ||||      |||  | ||| |   |  |   ||||                               
seq2      tGGCCGCGCTGTTaacATCTTCCGccctttcttcgcttccctccct--gctcccgagtcttcggacatccaattggctgagtctctgattcctgtgaggg
            750       760       770       780       790         800       810       820       830       840   

            840       850       860       870       880             890       900       910       920         
seq1      -cccagtttacagaagaggaaactgaggcccagacggggagcagctgac------accaagtcgttaagagaatcagcgaaggggctgggaat-------
           || || ||| | || |  ||  |  |   || ||||       || |       | ||| |   |||   || |  |     ||  | || |       
seq2      tccaagattaaaaaaaataaatttacgcgtcaaacggaattttcctaaatacataagcaaataaataaataaacccacactacggaagcgacttgtctaa
              850       860       870       880       890       900       910       920       930       940   

                               930       940       950       960                 970       980       990      
seq1      ---------------ccaggac-ctgcgccttttacccaccgcggcgccggtctcacgt----------gcagtcccttcgctcttctcccctagt----
                         |||  || | || |   | || |  || |   |||| ||||| |          || | ||| | |  ||     ||| |     
seq2      ccgctttcctattggccataactcggctcacgtgacgctgcgagagaccgg-ctcacttccgccaggcagcggaccccttgggctcggagcctcggagac
              950       960       970       980       990       1000      1010      1020      1030      1040  

                  1000
seq1      ----tcggtgcc
              || |||||
seq2      ccgctccgtgcc
              1050    

MAVID ALIGNED HITS

Matrix
Identity
Seq1 from
Seq1 to
Seq2 from
Seq2 to
Strand
Score1
Score2
Rel.Score1
Rel.Score2
Factor
Found by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M00496*
52.63
165
172
117
124
1
5.438
4.321
0.86
0.82
Pro only
M L
M00497*
52.63
165
172
117
124
1
7.250
5.348
0.96
0.87
Pro only
M L
M00499*
52.63
165
172
117
124
1
5.727
5.596
0.89
0.88
Pro only
M L
M00500*
52.63
165
172
117
124
1
8.262
7.040
0.96
0.91
Pro only
M L
M00704*
55.56
166
171
118
123
2
5.117
5.117
0.82
0.82
Pro only
M L
M00971*
52.63
166
173
118
125
1
6.109
6.702
0.83
0.85
Pro only
M L
MA0039
50.00
166
175
118
127
2
8.425
6.082
0.90
0.84
Gklf
M L
M00658*
50.00
167
174
119
126
2
6.103
7.704
0.81
0.87
Pro only
M L
MA0080
52.78
167
172
119
124
2
8.579
6.483
0.99
0.91
SPI-1
M L
MA0098
52.78
167
172
119
124
1
5.777
6.300
0.91
0.93
c-ETS
M L
MA0081
51.35
168
174
120
126
2
5.764
6.960
0.84
0.88
SPI-B
M L
M00690*
50.00
169
176
121
128
1
5.863
8.905
0.85
0.97
Pro only
M L
MA0056
52.78
169
174
121
126
2
4.916
4.989
0.81
0.81
MZF_1-4
M L
M00313*
50.00
170
177
122
129
1
4.491
4.766
0.81
0.82
Pro only
M L
M00314*
50.00
170
177
122
129
1
4.587
4.950
0.81
0.83
Pro only
M L
M00315*
50.00
170
177
122
129
1
4.418
4.516
0.81
0.81
Pro only
M L
M00496*
50.00
205
212
140
147
1
4.409
4.162
0.82
0.81
Pro only
M L
MA0032
50.00
209
216
144
151
2
5.238
5.764
0.88
0.90
FREAC-3
M L
M00395
53.85
378
386
323
331
1
5.580
3.968
0.91
0.82
HOXA3 
M only
M00253
52.63
453
460
476
483
1
4.554
3.833
0.88
0.85
cap 
M only
M00971*
50.00
744
751
717
724
2
5.951
6.429
0.82
0.84
Pro only
M only
MA0098
50.00
745
750
718
723
2
4.122
3.674
0.83
0.81
c-ETS
M only
M00428*
50.00
768
775
747
754
1
4.677
4.130
0.84
0.81
Pro only
M only
M00175
55.00
770
779
749
758
2
6.386
7.305
0.81
0.85
AP-4 
M only
M00253
52.63
771
778
750
757
2
3.772
3.199
0.85
0.83
cap 
M only
M00492*
52.63
783
790
762
769
1
5.424
5.442
0.80
0.80
Pro only
M only
M00497*
52.63
783
790
762
769
1
3.745
6.144
0.80
0.91
Pro only
M only
MA0080
52.78
785
790
764
769
2
4.264
8.711
0.81
1.00
SPI-1
M only

BLASTZ

BLASTZ ALIGNMENT

                  10        20        30        40        50        60        70        80        90       100
seq1      cgtcatggcgcgagccctcctactccggcttccattggtgttttagactagccccgcctccccgccccggactcaggtggtgtgcgcgtgagcctgggac
           |    |  |  || |          || |   | |             || | |       | |    |     |    | |    |    |       
seq2      ggatgagaaggaagacaatgggaggtggatgggagtatgacacacaggaaggcacaaaggaacacataagtggtggtaactattattgattacaatattt
                  10        20        30        40        50        60        70        80        90       100

                 110       120       130       140       150       160       170       180       190       200
seq1      actagggggcgggcctacgccttctctggccacatgtggcaacatcttctgctcttactgccgtcccttccctatttccgggttctcgagcattcctatt
              |    | |  | ||        |  ||   || ||      ||  |              |        |    |    | |   |   |      
seq2      cagtgatcccagcgccaccttccacattaccgggtggggtctttactcattacaggggcaaatccatactaaaaaactcactgtgtgctggggtgtagcg
                 110       120       130       140       150       160       170       180       190       200

                 210       220       230       240       250       260       270       280       290       300
seq1      ggccaaattactggttacacgtgacatactcggcttttaaaatccctattggtccactccagactttcctcgtcgcacaacctggaagagccggcccagc
           |   |        ||   |  |                | |         |   |     ||   | |   |   |        | |    |       
seq2      cgatcagcacgcactttatccagcacacaggcagaggggacagatgagaccgggtatggttgagggtgcattttctaaggaggaaacggaaggataggaa
                 210       220       230       240       250       260       270       280       290       300

                 310       320       330       340       350       360       370       380       390       400
seq1      tgtttctctattggcggttcctccattcatgtgactcttctgcacgctcactcaaagctgatgctgagaacttgcttcctgattggtagccgggcgaatc
            ||       | | | | | | |      |    |     |  | ||||    |  |  ||       | || |        |    | ||  | |   
seq2      gattaaagatgttgagttgcatactaagtgggtggtgaggcgagccctcatctgagcccaataacagccaattaccctaattatcaacggcgccccagga
                 310       320       330       340       350       360       370       380       390       400

                 410       420       430       440       450       460       470       480       490       500
seq1      cacgtgacttggccgctaatgcccgcccaacccgctcccctattggttgaaatcacagcccttcagctgccacggtgagaacgcagcactcgggttagga
          |  |        | |          |||||  |    | ||     |    |        |   |     |      |   | |  | |       ||| 
seq2      cgaggcctagaactgagcgccttgacccaagtcatctcgctccgcctcagcaatgacctgccataaggctcgatcacaccccacttctccaccccgaggc
                 410       420       430       440       450       460       470       480       490       500

                 510       520       530       540       550       560       570       580       590       600
seq1      agcggatctcgcaagctccgagcgtcagctgccgggtacggtctttggcgttagcgcttctcccatcccatgagtgcccccagcagagtccagtcggact
            |||    |       ||  | | | |   |||||| |||        | |    |  |  |         ||   | | |  ||   |  ||| | | 
seq2      cacggcgtgccgctcacccccgagcctgggtccgggtccggggcccacagctccgccaccatctcggtgtgcagaaactcgaatagcaccgcgtccgcca
                 510       520       530       540       550       560       570       580       590       600

                 610       620       630       640       650       660       670       680       690       700
seq1      gtcatcctttctgcgactctggcgctggtcccgagcagctcacgggcccgtgtgcttccgggtctgagattggcatggtggaccaggtggagggtgtggc
            |  |   ||     |       |||| |        |          |      || ||   |  |   |   || | |   |           |   
seq2      tacgccgcctcgcgaccctcacgcctggccaacgcttccggctcccattggtcagctcgggaggtaggcccgatctgattggtgatcctatttagctccg
                 610       620       630       640       650       660       670       680       690       700

                 710       720       730       740       750       760       770       780       790       800
seq1      ctctactaggaggcaaattcgtaaagacctcggcttgggactccgggaactcgggccccagatccttgttcgagctggtcttcagtttccccatctgtac
          |     |                  |  |            |||  |  | ||      | ||| |    |          |    | ||   ||   | 
seq2      cctgcttcttgaaagccaggaggcgggtccaccgagccccttccttggccgcgctgttaacatcttccgccctttcttcgcttccctccctgctcccgag
                 710       720       730       740       750       760       770       780       790       800

                 810       820       830       840       850       860       870       880       890       900
seq1      gctgaagagcctggggtccagtaacccccatcatcacccagtttacagaagaggaaactgaggcccagacggggagcagctgacaccaagtcgttaagag
           ||   ||        |     |  | |      |    ||  | ||  |    |||              |  |   |       |        |  ||
seq2      tcttcggacatccaattggctgagtctctgattcctgtgagggtccaagattaaaaaaaataaatttacgcgtcaaacggaattttcctaaatacataag
                 810       820       830       840       850       860       870       880       890       900

                 910       920       930       940       950       960       970       980       990      1000
seq1      aatcagcgaaggggctgggaatccaggacctgcgccttttacccaccgcggcgccggtctcacgtgcagtcccttcgctcttctcccctagttcggtgcc
           |       |         |  | | |       | | |    |  |    |    | |       | |  |    |    |       |        | 
seq2      caaataaataaataaacccacactacggaagcgacttgtctaaccgctttcctattggccataactcggctcacgtgacgctgcgagagaccggctcact
                 910       920       930       940       950       960       970       980       990      1000

                                                                
seq1      ------------------------------------------------------
                                                                
seq2      tccgccaggcagcggaccccttgggctcggagcctcggagacccgctccgtgcc
                1010      1020      1030      1040      1050    

BLASTZ ALIGNED HITS

No hits found

Run time: 86.9 sec