Results for the job "W9CqIy Mon Jul 12 16:48:53
2004":
Parameters:
PWM threshold: 80
%
Homology threshold: 50 %
Flank length: 15
bp
Plain files:
Raw
TFBSs data
List
of CONREAL aligned TFBSs
CONREAL
alignment
Graphical representation of aligned TFBSs.
Bars represent number of
aligned hits found within 20 bp window calculated in coordinates of the longer
sequence.
Each black line represents an aligned TFBS.
CONREAL:
CONREAL alignment:
Aligned TFBSs are shown in uppercase.
No attempts
were made to align regions not covered by TFBSs (lowercase).
10 20 30 40 50 60
Mouse_pa ttgggggttgcttctcctcttatgtggctcatgggggtcggatcaagtgctcaggattgc
|| || | | ||| | | | | | ||| |
Human_PLDNccaggataatgttttttttttaagatggaatctcgccctgtcgcccaggctggagtgcag
10 20 30 40 50 60
70 80 90 100 110 120
Mouse_pa agccaggcgcctttacccactgagaggacagatgcccatgaggccctgcacatccactct
|
Human_PLDNtggagctg----------------------------------------------------
130 140 150 160 170 180
Mouse_pa gattttggtggggcggggagcagggtttctcaccggggcctgggcaccacagccagcttt
Human_PLDN------------------------------------------------------------
190 200 210 220 230 240
Mouse_pa ttatccatgctggggactgaactcatatccttgtggctctggctctactgacagtgctgt
Human_PLDN------------------------------------------------------------
250 260 270 280 290
Mouse_pa ctctctcCCCAGCTCAGctgttgggtttccacactgtaaatccctgttcttgccca----
| ||||||| | || | ||| | | ||| | |
Human_PLDN-------CTCAGCTCACtgcaacctctgcctccctggttaaagcgattccaggataatct
70 80 90 100 110 120
Mouse_pa ------------------------------------------------------------
Human_PLDNatttcaacaccaggtaattaacaaccttaattcccatttgctatgcaagctaacatattc
130 140 150 160 170 180
Mouse_pa ------------------------------------------------------------
Human_PLDNacagcttctggtgttcaggctgtggacatctttgaggggctagtattctgcctaccagag
190 200 210 220 230 240
Mouse_pa ------------------------------------------------------------
Human_PLDNttaataagaaggagctaatactaagaggaaaagaggcccaaagaggaaagtgtgtgaatg
250 260 270 280 290 300
Mouse_pa ------------------------------------------------------------
Human_PLDNcactgataaaggcaatggggaaccagtgcaagtttctgagtcttgcaaattcttattttt
310 320 330 340 350 360
Mouse_pa ------------------------------------------------------------
Human_PLDNttgaaataagctttggttgcagctgagaaaactgaacaggcataattggggagcaacatt
370 380 390 400 410 420
Mouse_pa ------------------------------------------------------------
Human_PLDNaggaggccaccattacagttgagatgagagggtataagctagagatggcagagctaaatc
430 440 450 460 470 480
Mouse_pa ------------------------------------------------------------
Human_PLDNgttttctttggtccaaagctgcctatgcccttttctaagtgttttccaacagaattcatg
490 500 510 520 530 540
Mouse_pa ------------------------------------------------------------
Human_PLDNagatcattccacaggatctcagcaagtgcagtttctgataacttggccgaatttgttcag
550 560 570 580 590 600
Mouse_pa ------------------------------------------------------------
Human_PLDNtagctgctgcaacggagggcttaaatctttcatctacacttaacaaggggagcccggaaa
610 620 630 640 650 660
Mouse_pa ------------------------------------------------------------
Human_PLDNagtggcaaaaccctagttagcaaggctgaggctcgcagagacctaggcatcgaatttttt
670 680 690 700 710 720
Mouse_pa ------------------------------------------------------------
Human_PLDNaatggtccaaatcgcagggaaagcgagcactccctgttctgaaggttttccctaaacacg
730 740 750 760 770 780
300 310 320
Mouse_pa ------------------------------GGTCTCTActtctgactttcttctcttcca
|| || | || ||||| | |
Human_PLDNgagacaacactaaaaagctgtgccgcgtgaGGGCTGAAagtcctgttttctccctagctt
790 800 810 820 830 840
330 340 350 360 370 380
Mouse_pa gaaagatcc---CCAGCAGGCtctcaaggagctggctaagatgtgcatcttggctgactg
| || || | ||||| | | | | |||| |||| |
Human_PLDNcagtgaagaaagCCTGACGGCtcccccgcgtccaacaaagacaacgctcttccggtcttc
850 860 870 880 890 900
390 400 410 420 430 440
Mouse_pa caccctggtcctggcctggaggtgagGCCCAGCCCTCCACCCTCACCCCCatgccctgca
| || | || | || ||||| || |||| || |
Human_PLDNgtgacccaccccgtgagcag------CCCAAACCGACCACCGTCCTCCCCcagctcccac
910 920 930 940 950
450 460 470 480 490 500
Mouse_pa ccagccaaggcagcctttgtagtggtagtggttcctaagccaagcatggtgacacaagcc
| | | |
Human_PLDNcaatcggatcgcagggact-----------------------------------------
960 970
510 520 530 540 550 560
Mouse_pa tataatcacagccctgggaagtccaaggccagcctgggctaatgagactagaggccagat
Human_PLDN------------------------------------------------------------
570 580 590 600 610 620
Mouse_pa atatccaggttagattcaacaactgaaagaattctgtgtctagtgttcctggtttgttct
Human_PLDN------------------------------------------------------------
630 640 650 660 670 680
Mouse_pa gttctccccagagtctccatagcaaaggcctgcctcagcctcccgagtgccaggattaag
Human_PLDN------------------------------------------------------------
690 700 710 720 730 740
Mouse_pa tgtaccaccacatctgtgtccatatctccatctctagaggtgatttaactggctcaccaa
Human_PLDN------------------------------------------------------------
750 760 770 780 790 800
Mouse_pa ccaaaccacaaatagtcaatttaggaaagaaaaaaacccacatcttttcctcacaccata
Human_PLDN------------------------------------------------------------
810 820 830 840 850 860
Mouse_pa agtaaaattaaatcctgttaaattaatagctctcatcttagaaagactgcagtaagagtg
Human_PLDN------------------------------------------------------------
870 880 890 900 910 920
Mouse_pa tttgcaagcactaggactggcaccatgacagcacttcctgacactggaaccctgcgttag
Human_PLDN------------------------------------------------------------
930 940 950 960 970 980
Mouse_pa ggactgcagaaacctggcttcCGTGGCTCacacctgtaatcccagcacttgggaaatgga
|| | | ||||| | | ||
Human_PLDN---------------------CGAGCCCCacactgctgagtccgctga------------
980 990 1000
990 1000
Mouse_pa gacaggaggatcagaag-
Human_PLDN-----------------C
CONREAL aligned hits:
| Matrix |
Identity |
Seq1 from |
Seq1 to |
Seq2 from |
Seq2 to |
Strand |
Score1 |
Score2 |
Rel.Score1 |
Rel.Score2 |
Factor |
| M00175 |
0.53 |
248 |
257 |
69 |
78 |
1 |
6.386 |
8.175 |
0.81 |
0.88 |
AP-4 |
| M00646* |
0.50 |
297 |
304 |
812 |
819 |
1 |
5.783 |
6.254 |
0.81 |
0.83 |
Pro
only |
| M00470* |
0.51 |
336 |
344 |
854 |
862 |
2 |
7.561 |
7.105 |
0.88 |
0.87 |
Pro
only |
| M00469* |
0.51 |
336 |
344 |
854 |
862 |
2 |
6.518 |
8.162 |
0.87 |
0.93 |
Pro
only |
| M00446* |
0.56 |
410 |
424 |
922 |
936 |
2 |
9.921 |
9.226 |
0.89 |
0.87 |
Pro
only |
| M00378 |
0.55 |
415 |
426 |
927 |
938 |
1 |
8.258 |
5.983 |
0.89 |
0.82 |
Pax-4 |
| M00706* |
0.54 |
420 |
428 |
932 |
940 |
2 |
7.570 |
7.094 |
0.85 |
0.83 |
Pro
only |
| M00801* |
0.58 |
424 |
429 |
936 |
941 |
1 |
4.924 |
4.944 |
0.83 |
0.83 |
Pro
only |
| M00695* |
0.57 |
424 |
430 |
936 |
942 |
2 |
6.147 |
6.873 |
0.86 |
0.89 |
Pro
only |
| M00083 |
0.58 |
426 |
433 |
938 |
945 |
2 |
6.536 |
6.610 |
0.83 |
0.83 |
MZF1 |
| M00428* |
0.50 |
945 |
952 |
975 |
982 |
1 |
4.390 |
3.875 |
0.82 |
0.80 |
Pro
only |