CONREAL server

Results for the job "2phOgd Fri Jul 9 18:27:53 2004":

Parameters:
  PWM threshold: 80 %
  Homology threshold: 50 %
  Flank length: 15 bp

Plain files:
  Raw TFBSs data
  List of CONREAL aligned TFBSs
  CONREAL alignment

Graphical representation of aligned TFBSs.

Bars represent number of aligned hits found within 20 bp window calculated in coordinates of the longer sequence.
Each black line represents an aligned TFBS.

CONREAL:

CONREAL alignment:

Aligned TFBSs are shown in uppercase.
No attempts were made to align regions not covered by TFBSs (lowercase).

                  10        20              30        40        50    
mu        ataaaggaaattatgcaaaggga------AAGAAATTTttttctacaatgcagaaaaa--
          |    ||      |    ||| |         ||||   |  | |||  || |||     
MUTED     actggggttccattatgtaggcatagttgGTTAAATCActggccacatggctgaactcag
                  10        20        30        40        50        60

                                                                      
mu        ------------------------------------------------------------
                                                                      
MUTED     tctccagccccaatctgctccccagaggtgggcctgcttatgtgactcaaagcctaagcc
                  70        80        90       100       110       120

                                                                      
mu        ------------------------------------------------------------
                                                                      
MUTED     ctcatggttggccggcccttctggtgtggccagcctccattctgaaatcatcttgggccc
                 130       140       150       160       170       180

                                                                      
mu        ------------------------------------------------------------
                                                                      
MUTED     tccatgagccatctcattagcataaactcaggtgtatttccagaggcccaccatgaataa
                 190       200       210       220       230       240

                              60        70        80        90       1
mu        --------------TGAATATGAAATTTCTTGGAagtgaggagaataacaaatgtctttg
                        | | |  | || ||||  | | |||||  |    | |    |    
MUTED     caaagacacttctaTCACTTGGGAAATTCTAAGGattgagggtacctcccaggaaccaga
                 250       260       270       280       290       300

          00       110       120                                      
mu        aaaactatgatttctacatattgat-----------------------------------
             |   |    || |  | || ||                                   
MUTED     gtcaaagtccagtcaaattctttattatacaacgtgagtttactgacttgaacagaaaga
                 310       320       330       340       350       360

                                                                      
mu        ------------------------------------------------------------
                                                                      
MUTED     gggagcaagagaagcattctaggaaacaggtgtctaaaaagaaaggcaggaatagtcagc
                 370       380       390       400       410       420

                                                                      
mu        ------------------------------------------------------------
                                                                      
MUTED     cacactcatggcatagtagggaaacagcccccagctaattggctttgctatacagtagtc
                 430       440       450       460       470       480

                                                                      
mu        ------------------------------------------------------------
                                                                      
MUTED     cccccttatctgaggtttcactttctgtggtttcattacccgcaggacggtacaataaga
                 490       500       510       520       530       540

                                                                      
mu        ------------------------------------------------------------
                                                                      
MUTED     tattttgggagagagactacattcacataacttttattaaattgttctaattgttcatct
                 550       560       570       580       590       600

                                                         130       140
mu        -------------------------------------------TAAAAAGCTaggaaatt
                                                      ||||| |   | |  |
MUTED     cttactgtgcctaatttataaactttatcatatgtatatacagGAAAAAACAtagtatat
                 610       620       630       640       650       660

                 150       160       170       180       190       200
mu        aaattttttatttgtcctcctttgggggtttaccatttcttctgcgataatcccccaatt
          | ||  || | |  |                                             
MUTED     acatggttcagtactatatg----------------------------------------
                 670       680                                        

                 210       220       230       240       250       260
mu        cctgcttcacctagttattctctccatgtctcacttcaagactggagaCAAACACTGgtc
                                                          ||    | ||  
MUTED     ------------------------------------------------CAGTTTCAGgaa
                                                                 690  

                 270       280       290       300       310       320
mu        ttttctgggaagtctttcctgatcccctcaacagctagtatccaCAGGTATGGaacgatt
          | | |||||     |    ||    |                  ||| ||||| | ||  
MUTED     tctactgggggtcttggaatgtattctcag--------------CAGATATGGgaggaca
               700       710       720                     730       7

                 330       340       350       360       370       380
mu        cctcttcctgccgtttatgtcgctttacgttcctccttcagactggactaagacccttta
           || | |                                                     
MUTED     actgtac-----------------------------------------------------
          40                                                          

                 390       400       410       420       430       440
mu        ggatgacattgttcattgttcagaagagagtagcggaggaagcggtcacagctgagtcct
                                                                      
MUTED     ------------------------------------------------------------
                                                                      

                 450       460       470       480       490       500
mu        aaggaagaacccctggatgatgaggaggtaaaaaccactgggaggccgtgcattgctctc
                                                                      
MUTED     ------------------------------------------------------------
                                                                      

                 510       520       530       540       550       560
mu        tttgaagcatgacaatttgttgagaaaatgaacattaTGGAATATatcaaatgtcagcac
                                               ||||||  | ||  | | |||  
MUTED     -------------------------------------TGGAATGCaccagctttgagcca
                                                 750       760       7

                 570       580       590       600       610       620
mu        ttattagtctaatttagggagaccatctcaaacacccaaccaagcaacaacaaaaaacct
                      | |  |   | |  |  |        |||   | |    |        
MUTED     aataaccagggctctgagtttagctccaaagttcaagcaccttcctattctag-------
          70       780       790       800       810       820        

                 630       640       650       660       670       680
mu        aaacaaaacaaaaacgagtttcttaacctctaaccgtgttgctttatttgttaaaaaaat
                                                                      
MUTED     ------------------------------------------------------------
                                                                      

                 690       700       710       720       730       740
mu        tatgatctgtctcctcaggttgctatgatgaccctaaggtgacaatacatgtcaaaatgc
                                                                      
MUTED     ------------------------------------------------------------
                                                                      

                 750       760       770       780       790       800
mu        tttataaaatagtggtggccagtaacaatgtagaaactatgtatatactactactgttat
                                                                      
MUTED     ------------------------------------------------------------
                                                                      

                 810       820       830       840       850       860
mu        tcttctgctcgccgcgccttgctccaaccatagtgagtttagttcctaccggcgtaggat
                                                                      
MUTED     ------------------------------------------------------------
                                                                      

                 870       880       890       900       910       920
mu        gggataaccgagaaacaagtaattttcaaacacctcccatacgcaGATCATCTGCCCTCA
                                                        | |||| ||||| |
MUTED     ---------------------------------------------CAGCATCCGCCCTGA
                                                             830      

                 930       940                             950       9
mu        TCCAGCATGGCCgcatcggctac----------------------ACTCCCGGCGCCTTC
          ||||||||||| |||   ||| |                      ||  | |||||||| 
MUTED     TCCAGCATGGCGgcaagagcttctgccagttcacagcctgactacACGGCAGGCGCCTTT
           840       850       860       870       880       890      

          60                       970       980       990      1000  
mu        CCCGAAcc----------------CAACGACtCCGACGCCCTGTGATGACGtaacaccag
          || |||||                 ||   ||||| |||||||| |||||  |    || 
MUTED     CCGGAAccgcccgctgggtagattAAATTTCtCCGGCGCCCTGTAATGACAcacacacaa
           900       910       920       930       940       950      

              1010      1020      1030      1040                      
mu        agcgtctctctccctaaaggtccgtgcctgcgccgtggac----------------GCCG
          |      |    |                  |||| |                   ||||
MUTED     aaaaaacccgggcgcgccttgtaagagggcggccgggtttgcgcaggcgcagcgtgGCCG
           960       970       980       990      1000      1010      

          1050      1060        
mu        CGGGTgggcggaactggtcggg
          ||||||||||||||||||||||
MUTED     CGGGTgggcggaactggtcggg
          1020      1030

CONREAL aligned hits:

Matrix	Identity	Seq1 from	Seq1 to	Seq2 from	Seq2 to	Strand	Score1	Score2	Rel.Score1	Rel.Score2	Factor
M00486*	0.51	24	32	30	38	1	4.966	4.977	0.84	0.84	Pro only
M00498*	0.50	24	31	30	37	2	4.563	5.094	0.84	0.86	Pro only
M00496*	0.50	24	31	30	37	2	6.071	4.963	0.89	0.84	Pro only
M00770*	0.52	53	64	255	266	1	6.797	6.437	0.86	0.84	Pro only
M00750*	0.54	59	65	261	267	1	5.825	5.491	0.85	0.83	Pro only
M00146	0.53	59	68	261	270	2	8.724	7.318	0.87	0.83	HSF1
M00147	0.53	59	68	261	270	1	7.442	6.427	0.87	0.84	HSF2
M00777*	0.51	60	72	262	274	1	12.502	7.148	0.97	0.82	Pro only
M00396	0.54	61	67	263	269	2	4.470	3.690	0.85	0.81	En-1
M00750*	0.51	62	68	264	270	2	6.906	4.867	0.89	0.81	Pro only
M00500*	0.50	62	69	264	271	1	7.537	4.092	0.93	0.81	Pro only
M00498*	0.50	62	69	264	271	1	4.563	3.999	0.84	0.82	Pro only
M00499*	0.50	62	69	264	271	1	7.769	6.898	0.98	0.94	Pro only
M00493*	0.50	62	69	264	271	1	7.410	7.114	0.94	0.93	Pro only
M00496*	0.50	62	69	264	271	1	6.071	4.235	0.89	0.81	Pro only
M00494*	0.50	62	69	264	271	1	6.020	6.078	0.87	0.87	Pro only
M00734*	0.51	124	132	644	652	1	6.841	11.086	0.84	0.97	Pro only
M00394	0.51	249	257	681	689	2	5.865	5.237	0.84	0.80	Msx-1
M00278	0.54	305	313	723	731	1	5.244	9.787	0.80	0.95	Lmo2 complex
M00704*	0.58	307	312	725	730	1	5.761	5.285	0.86	0.83	Pro only
M00500*	0.50	538	545	746	753	2	3.930	5.764	0.81	0.87	Pro only
M00499*	0.50	538	545	746	753	2	6.037	5.488	0.90	0.88	Pro only
M00493*	0.50	538	545	746	753	2	6.593	5.534	0.90	0.85	Pro only
M00496*	0.50	538	545	746	753	2	5.093	5.052	0.85	0.85	Pro only
M00497*	0.50	538	545	746	753	2	5.207	6.129	0.87	0.91	Pro only
M00704*	0.53	539	544	747	752	1	5.117	8.431	0.82	1.00	Pro only
M00750*	0.51	539	545	747	753	1	7.407	5.190	0.91	0.82	Pro only
M00693*	0.71	906	916	822	832	2	8.710	6.882	0.86	0.80	Pro only
M00076	0.70	906	915	822	831	2	5.442	7.101	0.85	0.91	GATA-2
M00075	0.70	906	915	822	831	2	5.382	6.981	0.85	0.91	GATA-1
M00184	0.72	907	916	823	832	1	8.919	6.539	0.89	0.81	MyoD
M00469*	0.72	914	922	830	838	1	5.637	6.208	0.84	0.86	Pro only
M00285	0.67	919	931	835	847	2	6.047	5.769	0.83	0.82	TCF11
M00322*	0.72	922	931	838	847	2	6.901	6.901	0.83	0.83	Pro only
M00793*	0.72	923	931	839	847	2	8.478	8.478	0.88	0.88	Pro only
M00076	0.72	923	932	839	848	1	4.396	4.886	0.81	0.83	GATA-2
M00470*	0.62	944	952	882	890	2	6.944	5.859	0.86	0.83	Pro only
M00469*	0.62	944	952	882	890	2	7.179	5.852	0.90	0.85	Pro only
M00803*	0.67	950	955	888	893	1	6.942	6.942	0.91	0.91	Pro only
M00803*	0.67	950	955	888	893	2	6.942	6.942	0.91	0.91	Pro only
M00428*	0.63	955	962	893	900	1	5.666	4.017	0.87	0.81	Pro only
M00223	0.62	956	964	894	902	1	11.573	9.390	0.95	0.89	STATx
M00223	0.62	956	964	894	902	2	7.631	8.164	0.83	0.85	STATx
M00396	0.54	967	973	921	927	2	3.738	4.470	0.81	0.85	En-1
M00695*	0.59	975	981	929	935	2	5.823	5.823	0.84	0.84	Pro only
M00716*	0.58	976	983	930	937	2	5.477	7.858	0.81	0.91	Pro only
M00419	0.52	980	991	934	945	2	5.391	5.391	0.82	0.82	MEIS1
M00285	0.51	980	992	934	946	2	7.901	8.180	0.89	0.90	TCF11
M00745*	0.55	981	990	935	944	2	8.857	6.211	0.88	0.81	Pro only
M00704*	0.56	985	990	939	944	1	5.285	5.761	0.83	0.86	Pro only
M00396	0.54	985	991	939	945	1	3.864	5.147	0.82	0.89	En-1
M00801*	0.56	988	993	942	947	2	9.190	6.673	1.00	0.90	Pro only
M00470*	0.69	1043	1051	1013	1021	1	8.258	8.258	0.90	0.90	Pro only
M00470*	0.69	1043	1051	1013	1021	2	4.924	4.924	0.80	0.80	Pro only
M00469*	0.69	1043	1051	1013	1021	1	7.829	7.829	0.92	0.92	Pro only
M00695*	0.68	1043	1049	1013	1019	1	5.931	5.931	0.85	0.85	Pro only
M00803*	0.67	1043	1048	1013	1018	1	6.643	6.643	0.89	0.89	Pro only
M00803*	0.67	1043	1048	1013	1018	2	4.687	4.687	0.80	0.80	Pro only
M00468*	0.70	1044	1050	1014	1020	1	5.272	5.272	0.84	0.84	Pro only
M00803*	0.72	1045	1050	1015	1020	1	6.791	6.791	0.90	0.90	Pro only
M00803*	0.72	1045	1050	1015	1020	2	5.163	5.163	0.83	0.83	Pro only