Results for the job "5dSl2J Thu Jul 29 18:16:01 2004":

Parameters:
  PWM threshold: 80 %
  Homology threshold: 50 %
  Flank length: 15 bp


Plain files:
  Raw TFBSs data
  List of CONREAL aligned TFBSs
  CONREAL alignment

Graphical representation of aligned TFBSs.

Bars represent number of aligned hits found within 20 bp window calculated in coordinates of the longer sequence.
Each black line represents an aligned TFBS.

CONREAL:



CONREAL alignment:

Aligned TFBSs are shown in uppercase.
No attempts were made to align regions not covered by TFBSs (lowercase).

                  10        20        30        40        50        60
OA1(human)ttgctcaggctggagtgcagtggtgtaatctctgctcactgcaacctccacttgccgggc
           |      |  |   |     | |  |  |||                            
gpr143(mouse)ctcactctgtagacctagctggcttcagactcac--------------------------
                  10        20        30                              

                  70        80        90       100       110       120
OA1(human)tcaagtgatcctcccacctcagcctccccagaagctagggctacaagcacgccccaccac
                                                                      
gpr143(mouse)------------------------------------------------------------
                                                                      

                 130       140       150       160       170       180
OA1(human)atccagctaatttttgttttgtttcgttttttgatacaaggtctggctctatcgctcagg
                                                                      
gpr143(mouse)------------------------------------------------------------
                                                                      

                 190       200       210       220       230       240
OA1(human)ctggagtgcagtggcactatcttggctcactgcaaactccacctcctgggctcaagcgat
                                                                      
gpr143(mouse)------------------------------------------------------------
                                                                      

                 250       260       270       280       290       300
OA1(human)cctcccacctcagcctgccgagtagcttggatcacaggcctgggccaccacaccgggcta
                                                                      
gpr143(mouse)------------------------------------------------------------
                                                                      

                 310       320       330       340       350       360
OA1(human)atgtttgtatttttaatagaggtggggtttcgccatgttgcccacgctggtctccaactc
                                                                      
gpr143(mouse)------------------------------------------------------------
                                                                      

                 370       380       390       400       410       420
OA1(human)ttgagctcaAGCGATCTGCCTGCCTCGGCCTCCCAAGgTGCTGGGATTACAGGTGTGAGC
                   ||  ||||||||||||| |||||||||| ||||||||||| ||||||   |
gpr143(mouse)---------AGAAATCTGCCTGCCTCTGCCTCCCAAG-TGCTGGGATTAAAGGTGTACAC
                       40        50        60         70        80    

                 430                                                  
OA1(human)tactgctctttctttaa-------------------------------------------
           | |   | |   |  |                                           
gpr143(mouse)caataaacctggctagagtaaaactagaagtaaactagactaatcaggaagctttaaatt
              90       100       110       120       130       140    

                                                   440       450      
OA1(human)-----------------------------------------CATTGATCTGtttgtttca
                                                   |||| ||     |   |  
gpr143(mouse)ggaaaatttccacccctctggtaatcttggtcctgtttcacCATTCATGCAcataggtgt
             150       160       170       180       190       200    

           460       470       480                                    
OA1(human)ttcattaattgtaaacgaaaatcctgcct-------------------------------
           ||| |   |  |       | |   ||                                
gpr143(mouse)atcagttggtcaagggtggtagcacaccattttaataccactactctggatgtagagaca
             210       220       230       240       250       260    

                                                                      
OA1(human)------------------------------------------------------------
                                                                      
gpr143(mouse)aattgatttatgtgggttcagggttcaaggtcagtctggtatacaaagtcagaccctgtc
             270       280       290       300       310       320    

                                           490       500       510    
OA1(human)-------------------------------CTGTGGGattatatccatgaatgagagag
                                         ||||| |  | | |   ||  || | | |
gpr143(mouse)tcaaaaacataaaggtaaaaccctcaagtctCTGTGTGtgtgtttgtgtgtgtgtgtgtg
             330       340       350       360       370       380    

             520                                                      
OA1(human)gccata------------------------------------------------------
              ||                                                      
gpr143(mouse)tgtgtaagttgttttatttggtgtttgcttatttgagacaagatctcactgtgtagtgtt
             390       400       410       420       430       440    

                                                                      
OA1(human)------------------------------------------------------------
                                                                      
gpr143(mouse)agctggcatggaactcactgtgtagaccatgatagatgtgaggcttgcctttgtctccaa
             450       460       470       480       490       500    

                                                                      
OA1(human)------------------------------------------------------------
                                                                      
gpr143(mouse)agtgctggaattaaagatgtcattaatttaaatggaaggtctctgtgggcttccatgaga
             510       520       530       540       550       560    

                          530       540       550       560       570 
OA1(human)---------AAAAAAAgcactaattggacaaccatctctacttaggaaaaaagcagttac
                   |||  |||     |||           | || | ||   |       ||| 
gpr143(mouse)aagggccacAAAGGAAgatactatttctttcttggatgtattcagaggagccaggcttag
             570       580       590       600       610       620    

                580       590       600       610       620       630 
OA1(human)agggatcagtcacagTTTATGAACATGTtctggcgccttaaaggcatcaaaatCAGGATG
                         |  || |||||     ||   | |   ||     | || | ||||
gpr143(mouse)---------------TGGATAAACATCAgtaggttgcatctcgggcatcacatGAAGATG
                            630       640       650       660       67

                640       650       660       670       680           
OA1(human)TCAGAGtCCCAAATAGGAAAGATCTagtccacgaggcctgtttctctagaagaccagt--
          ||| || |  ||| |||||   ||| ||  | | | | |   |||| |||    |     
gpr143(mouse)TCACAGaCAGAAACAGGAACTGTCTggttaatgggacatagctctccagagagaccagtt
          0       680       690       700       710       720       73

            690       700       710       720       730           740 
OA1(human)----AAAGATGGCAGGTTTGGcgctctaggtggcagagaaaccacc----AGGAAGGCtt
               || |||| ||||| || | |  ||||     |||    |      |||||||| |
gpr143(mouse)aagaGAAAATGGGAGGTTAGGggttgcaggttttgtagaggtaaggtacaAGGAAGGCct
          0       740       750       760       770       780       79

                750       760       770       780       790       800 
OA1(human)ggtgAATGGGGAgaaaggtaaCCTTCCCAACCTTTCTGctTCTCCTTCCACTTCCCTCCT
          |||| |||| || |  | || ||       |  ||||| | ||||| || | || |||| 
gpr143(mouse)ggtgGATGGAGAaattgcta-CCCCTTTCCCACTTCTGgtGCTCCTCCCCCATCTCTCCC
          0       800        810       820       830       840       8

                810       820       830       840       850       860 
OA1(human)CCTcctccctcttcctctcctctcagccctccctctctctgtcctcctcctccgcccgcc
           || |     |  | |                                            
gpr143(mouse)TCTgcatatccagcatt-------------------------------------------
          50       860                                                

                870       880       890       900       910       920 
OA1(human)caagcatCACCTCGTGAGGCCTCGTGGCGTTagcccAGTGCTCTCGGCCCCcaccgagcc
                   ||||||||| ||||||||| || |   || || | | ||||     |||||
gpr143(mouse)-------AGCCTCGTGAGACCTCGTGGCCTTtgaggAGGGCACACCGCCCAgctggagcc
                   870       880       890       900       910       9

                930       940       950       960       970       980 
OA1(human)tggctctactgcaggcgctgGGGGTTGGGGTGGGGGAGAGGCCCAGGGCACATGATGCCG
          |       ||          ||| |  || | ||| |||||| |||||||||||| ||| 
gpr143(mouse)tttgcagcctaa--------GGGCTGAGGTTCGGGAAGAGGCACAGGGCACATGACGCCC
          20       930               940       950       960       970

                990      1000 
OA1(human)Cccccagcccgcccagcac-
             |   | | ||   |   
gpr143(mouse)Aatctccctcaccagcccag
                 980       990

CONREAL aligned hits:

Matrix Identity Seq1 from Seq1 to Seq2 from Seq2 to Strand Score1 Score2 Rel.Score1 Rel.Score2 Factor
M00076 0.65 370 379 35 44 2 6.570 5.500 0.89 0.85 GATA-2
M00075 0.65 370 379 35 44 2 6.156 5.614 0.88 0.86 GATA-1
M00272 0.70 372 381 37 46 1 5.215 4.983 0.81 0.81 p53
M00733* 0.64 374 388 39 53 2 8.562 8.562 0.82 0.82 Pro only
M00272 0.68 376 385 41 50 1 5.177 5.177 0.81 0.81 p53
M00701* 0.69 377 385 42 50 1 8.604 8.604 0.86 0.86 Pro only
M00008 0.68 377 386 42 51 2 8.069 8.069 0.87 0.87 Sp1
M00500* 0.71 378 385 43 50 1 4.051 4.051 0.81 0.81 Pro only
M00720* 0.69 378 386 43 51 2 9.538 9.538 0.91 0.91 Pro only
M00469* 0.69 378 386 43 51 1 4.616 4.616 0.81 0.81 Pro only
M00706* 0.67 379 387 44 52 2 6.733 8.928 0.82 0.90 Pro only
M00695* 0.68 380 386 45 51 2 5.779 5.779 0.84 0.84 Pro only
M00469* 0.69 382 390 47 55 1 6.836 5.183 0.88 0.83 Pro only
M00695* 0.73 383 389 48 54 2 5.338 5.338 0.82 0.82 Pro only
M00695* 0.73 386 392 51 57 2 7.466 5.779 0.91 0.84 Pro only
M00497* 0.71 387 394 52 59 1 4.263 3.869 0.82 0.81 Pro only
M00695* 0.73 389 395 54 60 2 6.873 6.873 0.89 0.89 Pro only
M00141 0.72 389 397 54 62 2 9.734 9.734 0.92 0.92 Lyf-1
M00087 0.62 399 410 63 74 1 8.911 8.018 0.89 0.86 Ik-2
M00482* 0.61 401 411 65 75 2 13.525 13.525 0.99 0.99 Pro only
M00133 0.60 401 415 65 79 1 6.324 6.324 0.81 0.81 Tst-1
M00623* 0.60 401 413 65 77 2 9.890 11.008 0.90 0.93 Pro only
M00493* 0.66 402 409 66 73 2 4.763 4.763 0.82 0.82 Pro only
M00494* 0.66 402 409 66 73 2 4.575 4.575 0.81 0.81 Pro only
M00133 0.60 402 416 66 80 1 6.364 7.880 0.82 0.86 Tst-1
M00498* 0.66 404 411 68 75 1 4.829 3.965 0.85 0.82 Pro only
M00071 0.61 405 420 69 84 1 12.492 9.105 0.88 0.82 E47
M00414 0.62 407 418 71 82 2 9.778 8.645 0.87 0.84 AREB6
M00413 0.62 407 418 71 82 2 11.750 9.762 0.94 0.88 AREB6
M00106 0.50 438 447 186 195 1 10.848 5.641 0.96 0.81 CDP CR3+HD
M00468* 0.51 486 492 356 362 1 7.069 5.600 0.93 0.85 Pro only
M00148 0.51 521 527 574 580 1 5.137 4.934 0.84 0.83 SRY
M00294 0.51 587 599 625 637 2 7.323 9.857 0.80 0.86 HFH-8
M00076 0.60 625 634 663 672 1 5.703 5.437 0.86 0.85 GATA-2
M00075 0.60 625 634 663 672 1 4.766 4.757 0.82 0.82 GATA-1
M00655* 0.57 626 632 664 670 2 9.938 6.158 1.00 0.84 Pro only
M00801* 0.64 630 635 668 673 1 6.520 6.599 0.89 0.89 Pro only
M00805* 0.61 632 637 670 675 1 5.774 5.774 0.83 0.83 Pro only
M00486* 0.67 639 647 677 685 1 4.512 6.465 0.82 0.91 Pro only
M00500* 0.63 646 653 684 691 2 7.810 6.061 0.94 0.88 Pro only
M00498* 0.63 646 653 684 691 2 6.097 3.999 0.90 0.82 Pro only
M00499* 0.63 646 653 684 691 2 5.502 6.810 0.88 0.94 Pro only
M00493* 0.63 646 653 684 691 2 6.695 6.798 0.91 0.91 Pro only
M00496* 0.63 646 653 684 691 2 5.304 5.756 0.86 0.88 Pro only
M00494* 0.63 646 653 684 691 2 5.291 6.600 0.84 0.89 Pro only
M00497* 0.63 646 653 684 691 2 4.954 6.442 0.86 0.93 Pro only
M00146 0.60 647 656 685 694 1 7.769 7.394 0.84 0.83 HSF1
M00147 0.60 647 656 685 694 1 8.558 6.712 0.91 0.85 HSF2
M00793* 0.54 690 698 734 742 2 11.657 6.573 0.99 0.82 Pro only
M00670* 0.61 696 703 740 747 1 9.503 7.955 0.96 0.90 Pro only
M00183 0.57 697 706 741 750 2 5.800 6.186 0.82 0.84 c-Myb
M00655* 0.68 732 738 780 786 2 6.628 6.628 0.86 0.86 Pro only
M00500* 0.66 732 739 780 787 2 9.336 9.336 0.99 0.99 Pro only
M00498* 0.66 732 739 780 787 2 6.097 6.097 0.90 0.90 Pro only
M00499* 0.66 732 739 780 787 2 6.107 6.107 0.91 0.91 Pro only
M00496* 0.66 732 739 780 787 2 4.877 4.877 0.84 0.84 Pro only
M00497* 0.66 732 739 780 787 2 6.285 6.285 0.92 0.92 Pro only
M00704* 0.69 733 738 781 786 1 5.117 5.117 0.82 0.82 Pro only
M00690* 0.68 746 753 794 801 2 8.405 6.536 0.95 0.88 Pro only
M00286 0.50 763 776 810 823 2 7.885 10.035 0.84 0.89 GKLF
M00500* 0.53 772 779 819 826 1 4.716 5.001 0.83 0.84 Pro only
M00498* 0.53 772 779 819 826 1 6.097 6.097 0.90 0.90 Pro only
M00499* 0.53 772 779 819 826 1 6.620 7.649 0.93 0.97 Pro only
M00493* 0.53 772 779 819 826 1 5.020 4.392 0.83 0.80 Pro only
M00496* 0.53 772 779 819 826 1 6.134 5.177 0.89 0.85 Pro only
M00497* 0.53 772 779 819 826 1 4.318 5.895 0.83 0.90 Pro only
M00807* 0.59 782 792 829 839 2 6.663 6.603 0.81 0.81 Pro only
M00286 0.57 785 798 832 845 2 6.749 8.174 0.81 0.84 GKLF
M00658* 0.63 786 793 833 840 2 8.294 5.780 0.89 0.80 Pro only
M00286 0.59 789 802 836 849 2 7.722 7.793 0.83 0.84 GKLF
M00286 0.59 790 803 837 850 2 7.721 9.060 0.83 0.87 GKLF
M00649* 0.55 795 802 842 849 2 8.587 9.499 0.87 0.90 Pro only
M00720* 0.54 795 803 842 850 2 7.295 7.442 0.83 0.84 Pro only
M00706* 0.54 796 804 843 851 2 7.380 8.285 0.84 0.88 Pro only
M00796* 0.64 869 880 866 877 1 8.433 9.474 0.84 0.87 Pro only
M00322* 0.68 870 879 867 876 1 5.868 7.440 0.80 0.85 Pro only
M00187 0.68 870 879 867 876 2 8.272 9.296 0.87 0.90 USF
M00799* 0.68 871 877 868 874 2 6.686 6.686 0.85 0.85 Pro only
M00726* 0.67 872 877 869 874 1 4.701 4.701 0.82 0.82 Pro only
M00726* 0.67 872 877 869 874 2 5.573 5.573 0.86 0.86 Pro only
M00236 0.65 877 892 874 889 1 7.699 8.067 0.81 0.82 Arnt
M00121 0.66 878 891 875 888 1 8.772 10.195 0.83 0.87 USF
M00121 0.66 878 891 875 888 2 8.772 10.195 0.83 0.87 USF
M00122 0.66 878 891 875 888 1 7.264 8.452 0.84 0.87 USF
M00122 0.66 878 891 875 888 2 7.264 8.452 0.84 0.87 USF
M00055 0.64 879 890 876 887 1 8.042 8.653 0.84 0.85 N-Myc
M00796* 0.64 879 890 876 887 1 7.408 9.466 0.82 0.87 Pro only
M00322* 0.68 880 889 877 886 1 8.206 6.634 0.87 0.82 Pro only
M00322* 0.68 880 889 877 886 2 9.009 8.749 0.90 0.89 Pro only
M00187 0.68 880 889 877 886 2 9.824 8.800 0.92 0.88 USF
M00799* 0.70 881 887 878 884 2 6.686 6.686 0.85 0.85 Pro only
M00470* 0.69 881 889 878 886 2 6.147 6.147 0.84 0.84 Pro only
M00469* 0.69 881 889 878 886 2 8.006 8.006 0.92 0.92 Pro only
M00726* 0.72 882 887 879 884 1 4.701 4.701 0.82 0.82 Pro only
M00726* 0.72 882 887 879 884 2 5.573 5.573 0.86 0.86 Pro only
M00799* 0.70 882 888 879 885 1 7.576 7.576 0.88 0.88 Pro only
M00428* 0.71 884 891 881 888 1 5.759 4.277 0.88 0.82 Pro only
M00650* 0.59 898 911 895 908 1 12.231 10.201 0.86 0.82 Pro only
M00695* 0.51 906 912 903 909 2 7.466 7.466 0.91 0.91 Pro only
M00378 0.55 942 953 931 942 2 7.748 7.325 0.88 0.86 Pax-4
M00658* 0.71 952 959 941 948 1 5.780 8.176 0.80 0.88 Pro only
M00649* 0.74 954 961 943 950 1 10.696 6.920 0.94 0.81 Pro only
M00695* 0.76 956 962 945 951 1 5.070 5.070 0.81 0.81 Pro only
M00373 0.65 961 981 950 970 2 8.819 9.848 0.80 0.82 Pax-4
M00470* 0.72 962 970 951 959 2 10.231 7.555 0.97 0.88 Pro only
M00469* 0.72 962 970 951 959 2 10.049 7.336 0.99 0.90 Pro only
M00121 0.68 966 979 955 968 1 8.846 8.699 0.84 0.83 USF
M00121 0.68 966 979 955 968 2 8.846 8.699 0.84 0.83 USF
M00122 0.68 966 979 955 968 1 8.487 8.214 0.87 0.87 USF
M00122 0.68 966 979 955 968 2 8.487 8.214 0.87 0.87 USF
M00428* 0.68 966 973 955 962 2 3.952 3.952 0.81 0.81 Pro only
M00646* 0.71 967 974 956 963 1 5.551 5.551 0.80 0.80 Pro only
M00001 0.69 967 978 956 967 2 6.975 6.975 0.81 0.81 MyoD
M00277 0.69 967 978 956 967 2 7.580 8.781 0.83 0.86 Lmo2 complex
M00220 0.68 968 978 957 967 2 10.531 8.594 0.86 0.82 SREBP-1
M00322* 0.68 968 977 957 966 2 7.463 9.035 0.85 0.90 Pro only
M00799* 0.70 969 975 958 964 2 6.474 6.474 0.84 0.84 Pro only
M00804* 0.66 969 982 958 971 1 8.717 7.522 0.84 0.80 Pro only
M00240 0.70 970 976 959 965 2 6.785 6.785 0.85 0.85 Nkx2-5
M00726* 0.69 970 975 959 964 1 4.701 4.701 0.82 0.82 Pro only
M00726* 0.69 970 975 959 964 2 6.970 6.970 0.94 0.94 Pro only
M00801* 0.69 973 978 962 967 2 5.434 9.190 0.85 1.00 Pro only