Results for the job "pZobqm Wed Jun 30 18:01:15
2004":
Parameters:
PWM threshold: 80
%
Homology threshold: 50 %
Flank length: 15
bp
Plain files:
Raw
TFBSs data
List
of CONREAL aligned TFBSs
CONREAL
alignment
Graphical representation of aligned TFBSs.
Bars represent number of
aligned hits found within 20 bp window calculated in coordinates of the longer
sequence.
Each black line represents an aligned TFBS.
CONREAL:
CONREAL alignment:
Aligned TFBSs are shown in uppercase.
No attempts
were made to align regions not covered by TFBSs (lowercase).
10 20 30 40 50 60
HCNO aaggtctaggactccatgactcccagttccaccatctgggctcctggtttcatgccctga
||| |
Cno ggcaggctggagcctca-------------------------------------------
10
70 80 90 100 110 120
HCNO gttatacttccttttttgtgaaatgtggcatgtgtttgccaatgagtctttttctcagtc
Cno ------------------------------------------------------------
130 140 150 160 170 180
HCNO tgattcctgcttgtacaagtttggggagaggggatccaaaggcctgttcctttcagtcca
Cno ------------------------------------------------------------
190 200 210 220 230 240
HCNO atctgcaatgtttgtgtcaatataattatctttaaaaaactttataggtctcctgtgaat
Cno ------------------------------------------------------------
250 260 270 280 290 300
HCNO ctcatcggggttcactccgttaaacaaaagtgctacctacaaatccctttgagataagtc
Cno ------------------------------------------------------------
310 320 330 340 350 360
HCNO catctctatcttgggcttctgctaatactgacgaacaagccttaagccttctggaggcct
Cno ------------------------------------------------------------
370 380 390 400 410 420
HCNO tgtggtttgactgatggactctgtgagccacaccattaatctctttaaggagctgttagt
Cno ------------------------------------------------------------
430 440 450 460 470 480
HCNO ctaactgaatggtattctcaggcaccgtctttgcttttttttttgagattttaaaggatt
Cno ------------------------------------------------------------
490 500 510 520 530 540
HCNO taaccgtcacatctcaacttcacctttgtttttttctggcagtaccctggatttgatatt
Cno ------------------------------------------------------------
550 560 570 580 590 600
HCNO tgcttggaaactattactatttcttagttttacgccatttgcaatcaggcgaagctgagg
Cno ------------------------------------------------------------
610 620 630 640 650 660
HCNO actttaaaaatcatccaaagtcgtcaaggtccatcccttttgtgtttcgtcttgcttatc
Cno ------------------------------------------------------------
670 680 690 700 710 720
HCNO tcatttattttactataaacagcaaaaagaaatgaaggacaggagggagacgttCATGGG
||||||
Cno ------------------------------------------------------CATGGG
20
730 740 750 760
HCNO TGCTGGacatgtcctacctgttggtctggatagaagatgcatg-----------------
|||||| | | || | | | | |
Cno TGCTGGtgggtactacacagtggatagatgtgggaacaagtctaagagagctgtgaactt
30 40 50 60 70 80
HCNO ------------------------------------------------------------
Cno actgtgaactacggataggccattgtgtgggatgttcttcccacaaggtggccttctaga
90 100 110 120 130 140
HCNO ------------------------------------------------------------
Cno aagaattacataaactgtgataagaggatacgcaaggacgtgcaggaaatgccctggcat
150 160 170 180 190 200
770
HCNO ----------------------------------------------GTTGTATggatgtg
| | | | | |
Cno gtccccgttatctctgtgggaaagacaaataggagggatattcttgGCTCTTTtcacaag
210 220 230 240 250 260
780 790
HCNO tac--------------------------------------------AAAGTCATCAATG
| ||| | ||||
Cno accaaagatgataacaccaggtatattttctgtacttgtatttgctaAAACTAATCATAA
270 280 290 300 310 320
800 810 820 830 840 850
HCNO TgcacacttaaaatgtatgcactgtattgtattcctgctataccTTCGCTTaaaaaaga-
||| | | || | ||| |||| || |
Cno Atgtcacctcatattttgc-------------------------TTCCTTTaataataaa
330 340 350 3
860 870 880 890 900 910
HCNO AAAAAAAggttgaatgtgagttcgggcgtgagaaaacagcagcgcgcatgcgtgagcgtg
|| | | ||| ||| | ||| | | | ||
Cno AATGAGAagttctttgtattattcttgagctcaaacacctggagtcccccagttcctaga
60 370 380 390 400 410 4
920 930 940
HCNO agcgcgcatgcgtgagcgtgagcgcgctgggag---------------------------
| || | | | | ||
Cno cagggctttggaatatccttccatctacggagatttagccttggctggctacagggcagg
20 430 440 450 460 470 4
HCNO ------------------------------------------------------------
Cno tggagcaacagaggtaacctgctgtgacggtatggacagcctcagctctgcttcaatgta
80 490 500 510 520 530 5
HCNO ------------------------------------------------------------
Cno tttctctgacactatcatttgtcaatttaccaccaatctacctatcattccattatctat
40 550 560 570 580 590 6
950
HCNO -------------------------------------------------GCCGGAAACAA
|| |||||
Cno tgatctgtctgtctgtctgagacagagcctcactacaggacccttggtgGCGTGAAACTG
00 610 620 630 640 650 6
960 970 980 990 1000 1010
HCNO aggtggatgcgcgtgaacagacgccctcgcaggccgccggaagcaaaggcgtgagcgcgc
|| || | |||| | | | | | || | | || |
Cno gccaggctggccttgaatttaagagatttgtctgcctctgactcctgagtgttgctacca
60 670 680 690 700 710 7
1020 1030 1040 1050 1060 1070
HCNO gtgcgtgcgtgtgcgggtgcgtgagcgtgagcgcgcggaggccggaagcgagcgctgcgc
| | ||| | | | || | | |
Cno aaggcctgtgccactggtctaatctatttgtcatctattatctatctgccatctacccat
20 730 740 750 760 770 7
1080 1090
HCNO agtcgggtggtcgcgggcc-
| | |
Cno ctttctatctatcctctaat
80 790
CONREAL aligned hits:
| Matrix |
Identity |
Seq1 from |
Seq1 to |
Seq2 from |
Seq2 to |
Strand |
Score1 |
Score2 |
Rel.Score1 |
Rel.Score2 |
Factor |
| M00726* |
0.61 |
715 |
720 |
18 |
23 |
1 |
5.806 |
5.806 |
0.88 |
0.88 |
Pro
only |
| M00450* |
0.56 |
717 |
725 |
20 |
28 |
1 |
7.854 |
7.854 |
0.87 |
0.87 |
Pro
only |
| M00448* |
0.56 |
717 |
725 |
20 |
28 |
1 |
6.225 |
6.225 |
0.81 |
0.81 |
Pro
only |
| M00449* |
0.56 |
717 |
725 |
20 |
28 |
1 |
7.481 |
7.481 |
0.84 |
0.84 |
Pro
only |
| M00624* |
0.54 |
718 |
724 |
21 |
27 |
2 |
6.759 |
6.759 |
0.90 |
0.90 |
Pro
only |
| M00396 |
0.57 |
720 |
726 |
23 |
29 |
1 |
4.138 |
4.138 |
0.83 |
0.83 |
En-1 |
| M00148 |
0.51 |
764 |
770 |
250 |
256 |
2 |
5.141 |
5.052 |
0.84 |
0.84 |
SRY |
| M00148 |
0.51 |
781 |
787 |
311 |
317 |
1 |
5.803 |
8.336 |
0.87 |
0.97 |
SRY |
| M00159 |
0.51 |
782 |
794 |
312 |
324 |
2 |
5.330 |
5.638 |
0.81 |
0.82 |
C/EBP |
| M00462* |
0.53 |
783 |
792 |
313 |
322 |
2 |
6.086 |
7.380 |
0.87 |
0.92 |
Pro
only |
| M00096 |
0.51 |
783 |
791 |
313 |
321 |
1 |
5.765 |
9.242 |
0.80 |
0.92 |
Pbx-1 |
| M00789* |
0.51 |
784 |
790 |
314 |
320 |
2 |
4.401 |
7.088 |
0.80 |
0.89 |
Pro
only |
| M00747* |
0.51 |
838 |
844 |
343 |
349 |
1 |
7.250 |
6.073 |
0.87 |
0.82 |
Pro
only |
| M00148 |
0.51 |
853 |
859 |
359 |
365 |
1 |
5.137 |
4.316 |
0.84 |
0.81 |
SRY |
| M00050 |
0.53 |
946 |
953 |
648 |
655 |
2 |
6.795 |
8.961 |
0.81 |
0.88 |
E2F |
| M00738* |
0.53 |
946 |
953 |
648 |
655 |
2 |
6.207 |
8.897 |
0.80 |
0.88 |
Pro
only |
| M00739* |
0.53 |
946 |
953 |
648 |
655 |
2 |
7.833 |
8.721 |
0.87 |
0.89 |
Pro
only |
| M00737* |
0.53 |
946 |
953 |
648 |
655 |
2 |
9.045 |
8.762 |
0.90 |
0.89 |
Pro
only |
| M00426* |
0.53 |
946 |
953 |
648 |
655 |
2 |
7.619 |
7.774 |
0.87 |
0.87 |
Pro
only |
| M00736* |
0.53 |
946 |
953 |
648 |
655 |
2 |
7.510 |
8.293 |
0.86 |
0.89 |
Pro
only |
| M00427* |
0.53 |
946 |
953 |
648 |
655 |
2 |
7.589 |
7.719 |
0.87 |
0.87 |
Pro
only |
| M00431* |
0.53 |
946 |
953 |
648 |
655 |
2 |
7.466 |
7.036 |
0.89 |
0.87 |
Pro
only |
| M00428* |
0.53 |
946 |
953 |
648 |
655 |
2 |
6.795 |
5.567 |
0.92 |
0.87 |
Pro
only |
| M00415 |
0.56 |
948 |
956 |
650 |
658 |
2 |
7.414 |
6.534 |
0.89 |
0.86 |
AREB6 |
| M00486* |
0.56 |
948 |
956 |
650 |
658 |
1 |
5.779 |
6.177 |
0.88 |
0.89 |
Pro
only |
| M00500* |
0.55 |
948 |
955 |
650 |
657 |
2 |
4.397 |
5.486 |
0.82 |
0.86 |
Pro
only |
| M00496* |
0.55 |
948 |
955 |
650 |
657 |
2 |
5.944 |
4.494 |
0.89 |
0.82 |
Pro
only |
| M00494* |
0.55 |
948 |
955 |
650 |
657 |
2 |
7.278 |
4.722 |
0.92 |
0.81 |
Pro
only |