Alignment of NM_212550 and chr19:50374395-50375003
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frame to left to navigate through alignment. Matching bases in coding regions of
cDNA and genomic sequences are colored blue and capitalized. Matching bases in
UTR regions of cDNA and genomic sequences are colored red and capitalized. Light
blue (coding) or orange (UTR) bases mark the boundaries of gaps in either side
of the alignment (often splice sites).
cDNA NM_212550
ATGGCGTCCC AGGGTCGTCG GCGGAGGCCC CTGCGGAGGC CGGAGACGGT 50
GGTGCCGGGG GAGGCGACCG AGACGGATTC CGAGCGCTCT GCGTCCTCGT 100
CGGAGGAGGA GGAGCTGTAC CTGGGTCCTT CGGGCCCGAC GCGCGGCCGC 150
CCCACGGGGC TGCGGGTGGC TGGGGAAGCC GCGGAGACCG ACTCGGAGCC 200
GGAGCCGGAG CCGGAACCGA CGGCCGCGCC GAGGGACCTG CCTCCACTCG 250
TGGTGCAGCG GGAATCGGCG GAGGAGGCCT GGGGCACGGA GGAGGCCCCG 300
GCGCCCGCCC CCGCGCGCTC GCTCCTGCAA CTTCGGCTGG CGGAGAGCCA 350
GGCGCGGCTG GACCACGACG TGGCGGCCGC CGTGAGCGGT GTCTACCGCC 400
GTGCAGGCCG CGACGTGGCC GCCCTGGCTA GTAGGCTGGC GGCAGCCCAG 450
GCGGCGGGGC TGGCGGCGGC CCACAGCGTG CGCCTGGCGC GCGGGGACCT 500
TTGTGCGCTG GCCGAGCGTC TGGACATCGT GGCTGGCTGC CGCCTGCTGC 550
CGGACATCCG CGGCGTGCCA GGGACCGAGC CTGAGAAAGA CCCGGGGCCG 600
CGGGCCTAG
Genomic chr19 :
aatcagcgaa ggggctggga atccaggacc tgcgcctttt acccaccgcg 50374344
gcgccggtct cacgtgcagt cccttcgctc ttctccccta gttcggtgcc 50374394
ATGGCGTCCC AGGGTCGTCG GCGGAGGCCC CTGCGGAGGC CGGAGACGGT 50374444
GGTGCCGGGG GAGGCGACCG AGACGGATTC CGAGCGCTCT GCGTCCTCGT 50374494
CGGAGGAGGA GGAGCTGTAC CTGGGTCCTT CGGGCCCGAC GCGCGGCCGC 50374544
CCCACGGGGC TGCGGGTGGC TGGGGAAGCC GCGGAGACCG ACTCGGAGCC 50374594
GGAGCCGGAG CCGGAACCGA CGGCCGCGCC GAGGGACCTG CCTCCACTCG 50374644
TGGTGCAGCG GGAATCGGCG GAGGAGGCCT GGGGCACGGA GGAGGCCCCG 50374694
GCGCCCGCCC CCGCGCGCTC GCTCCTGCAA CTTCGGCTGG CGGAGAGCCA 50374744
GGCGCGGCTG GACCACGACG TGGCGGCCGC CGTGAGCGGT GTCTACCGCC 50374794
GTGCAGGCCG CGACGTGGCC GCCCTGGCTA GTAGGCTGGC GGCAGCCCAG 50374844
GCGGCGGGGC TGGCGGCGGC CCACAGCGTG CGCCTGGCGC GCGGGGACCT 50374894
TTGTGCGCTG GCCGAGCGTC TGGACATCGT GGCTGGCTGC CGCCTGCTGC 50374944
CGGACATCCG CGGCGTGCCA GGGACCGAGC CTGAGAAAGA CCCGGGGCCG 50374994
CGGGCCTAGc catgattcta cttcccaacc tgactgcaat ttgggggtag 50375044
gccttgctgc ctctgggacc tgactctgtc tcctgtgtct cttatcaccc 50375094
cccaccccc
Side by Side Alignment
00000001 atggcgtcccagggtcgtcggcggaggcccctgcggaggccggagacggt 00000050
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
50374395 atggcgtcccagggtcgtcggcggaggcccctgcggaggccggagacggt 50374444
00000051 ggtgccgggggaggcgaccgagacggattccgagcgctctgcgtcctcgt 00000100
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
50374445 ggtgccgggggaggcgaccgagacggattccgagcgctctgcgtcctcgt 50374494
00000101 cggaggaggaggagctgtacctgggtccttcgggcccgacgcgcggccgc 00000150
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
50374495 cggaggaggaggagctgtacctgggtccttcgggcccgacgcgcggccgc 50374544
00000151 cccacggggctgcgggtggctggggaagccgcggagaccgactcggagcc 00000200
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
50374545 cccacggggctgcgggtggctggggaagccgcggagaccgactcggagcc 50374594
00000201 ggagccggagccggaaccgacggccgcgccgagggacctgcctccactcg 00000250
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
50374595 ggagccggagccggaaccgacggccgcgccgagggacctgcctccactcg 50374644
00000251 tggtgcagcgggaatcggcggaggaggcctggggcacggaggaggccccg 00000300
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
50374645 tggtgcagcgggaatcggcggaggaggcctggggcacggaggaggccccg 50374694
00000301 gcgcccgcccccgcgcgctcgctcctgcaacttcggctggcggagagcca 00000350
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
50374695 gcgcccgcccccgcgcgctcgctcctgcaacttcggctggcggagagcca 50374744
00000351 ggcgcggctggaccacgacgtggcggccgccgtgagcggtgtctaccgcc 00000400
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
50374745 ggcgcggctggaccacgacgtggcggccgccgtgagcggtgtctaccgcc 50374794
00000401 gtgcaggccgcgacgtggccgccctggctagtaggctggcggcagcccag 00000450
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
50374795 gtgcaggccgcgacgtggccgccctggctagtaggctggcggcagcccag 50374844
00000451 gcggcggggctggcggcggcccacagcgtgcgcctggcgcgcggggacct 00000500
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
50374845 gcggcggggctggcggcggcccacagcgtgcgcctggcgcgcggggacct 50374894
00000501 ttgtgcgctggccgagcgtctggacatcgtggctggctgccgcctgctgc 00000550
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
50374895 ttgtgcgctggccgagcgtctggacatcgtggctggctgccgcctgctgc 50374944
00000551 cggacatccgcggcgtgccagggaccgagcctgagaaagacccggggccg 00000600
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
50374945 cggacatccgcggcgtgccagggaccgagcctgagaaagacccggggccg 50374994
00000601 cgggcctag 00000609
>>>>>>>> ||||||||| <<<<<<<<
50374995 cgggcctag 50375003