Alignment of NM_133724 and chr5:35128851-35130340
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frame to left to navigate through alignment. Matching bases in coding regions of
cDNA and genomic sequences are colored blue and capitalized. Matching bases in
UTR regions of cDNA and genomic sequences are colored red and capitalized. Light
blue (coding) or orange (UTR) bases mark the boundaries of gaps in either side
of the alignment (often splice sites).
cDNA NM_133724
ccacgcgtcc CGGCCGAGCG GGCCATGGAG GAAGGACCCG CCGTCGGAAC 50
CCTGTCTCGA GAGGTCTCTA CCGAGGAGGC CGAGCCGTTG GGCGCCGCGT 100
GGAGCGGGGA CAGCGGCCAC GTCTCGCAGA GCCACAGCAG CGCGTCCGGG 150
CCGTGGGACG ATGACGGCCC CGAGGACGCG CCGGGCCGCG ACCTGCCGCT 200
GCTGCGCCGC GCCGCCTCGG GCTACGCCTC CAGCCTGCTG CCCAGCGCGG 250
GACCGAGGCC AGAGGTGGAG GCGCTGGACG CCAGCCTGGA GGAGCTGCTG 300
GCCAAGGTGG ACGAGTTCGT GGGCATGCTG GACATGATCC GCGGGGACTC 350
GTCGCATGTG GTGGGCGAGG GCGTGCCCCG GATCCACGCT AAGGCGGCCG 400
AGATGAGGCG CATCTACGGC CGGATCGACA AGCTGGAGGC CTTCGTGCGG 450
ATGATCGGGA GCAGCGTGGC CAGGATGGAG GAGCAGGTCG CCAAGGCCGA 500
AGCCGAGCTG GGGACCTTCC CGCGGGCCTT CCGGAGGCTG CTGCATACCA 550
TCAGCGTCCC CGCTCTCTTC AGGTCGGCGC CCAGCGGGCC CCAGCGCGCG 600
GCGTACGAGC CGCCAGTCCT GTTTCGGACC GAGGACCACT TCCCTGGCTG 650
CGGTGACAGA CCGCAGCTCT GAGCGTGTGC GCCTCCACCG CATGAGGACT 700
CCAGCGAGAC TCTTGTCCCA AGTGTTAAGA AATCCTGTGA ACTGGCGTAT 750
GTGATGCCGG GATGTGAAAG GTTAAAGTTT ATTTTCTGCA AACGACTTGA 800
CATCGTCAGT ATTCGATGCC AAGAGTGTAG GTCTCTATGT CTTCCAGTTC 850
GGATTCGAAA GCTCTTTGGT GGGGACCTGG GGAAGCCAAC TGAATTAATT 900
TATCGGTGCA ATACGGCAGA GCTGTTATTT TTATGGCCTT TATTACAGTG 950
AACAGTGTTT CCTTGTTAAG ATTTATATAT TTATATGATC AAAAGTGCCC 1000
AAGAAATTAA AGCTGTATTA TTAAATCCTA ACAGTGGTTC AGTTTTCTGT 1050
AGCCTTCTGG GATAGATAGT AAATTGTTTT GTATTATATT CAATTTTCTA 1100
TGGTGTAGAC TGTAAGCCAA AGGAAAGAAG ACAGTTTCTT AAGATAGCAA 1150
ACTGGGCGTT TTGTTGCAGG GAGTCCTGAA GTTGTATTTG ACAGTTTGAC 1200
TGGAAGCTTA GTTTATCAAA GCAAGAATAT TAATGTATGG TTGTCAGTGT 1250
TCTATTTATA GCACATCAAT TAAAATGTTA AATTTCTTTG GCAGAGATTT 1300
CCTTCTGGAG ATTATTTACC ATAGTTTGTT TGGAAATGAG CCTGTCGTTC 1350
ATGTTTTTAG TAGTGGGGTA AGAAAAGGCA ACTTCCTTCT TTGGAAGGTT 1400
TGTGTGAAGA GCCAACCTCG CTGCTCTTCT CACAGTTCTG CGGTTCTTCC 1450
CCCGAGTCTC GTTGAGCAGA AGGGTTTTGT TCTTTCACTT TGGGGCACAC 1500
Genomic chr5 :
tgtggatagt aggcttggct acttgttagg ggcgtgacgt ctttaggagg 35128800
cgccggaagc aggcatctca gaccgtaacg caatcgctca gcaccggaag 35128850
CGGCCGAGCG GGCCATGGAG GAAGGACCCG CCGTCGGAAC CCTGTCTCGA 35128900
GAGGTCTCTA CCGAGGAGGC CGAGCCGTTG GGCGCCGCGT GGAGCGGGGA 35128950
CAGCGGCCAC GTCTCGCAGA GCCACAGCAG CGCGTCCGGG CCGTGGGACG 35129000
ATGACGGCCC CGAGGACGCG CCGGGCCGCG ACCTGCCGCT GCTGCGCCGC 35129050
GCCGCCTCGG GCTACGCCTC CAGCCTGCTG CCCAGCGCGG GACCGAGGCC 35129100
AGAGGTGGAG GCGCTGGACG CCAGCCTGGA GGAGCTGCTG GCCAAGGTGG 35129150
ACGAGTTCGT GGGCATGCTG GACATGATCC GCGGGGACTC GTCGCATGTG 35129200
GTGGGCGAGG GCGTGCCCCG GATCCACGCT AAGGCGGCCG AGATGAGGCG 35129250
CATCTACGGC CGGATCGACA AGCTGGAGGC CTTCGTGCGG ATGATCGGGA 35129300
GCAGCGTGGC CAGGATGGAG GAGCAGGTCG CCAAGGCCGA AGCCGAGCTG 35129350
GGGACCTTCC CGCGGGCCTT CCGGAGGCTG CTGCATACCA TCAGCGTCCC 35129400
CGCTCTCTTC AGGTCGGCGC CCAGCGGGCC CCAGCGCGCG GCGTACGAGC 35129450
CGCCAGTCCT GTTTCGGACC GAGGACCACT TCCCTGGCTG CGGTGACAGA 35129500
CCGCAGCTCT GAGCGTGTGC GCCTCCACCG CATGAGGACT CCAGCGAGAC 35129550
TCTTGTCCCA AGTGTTAAGA AATCCTGTGA ACTGGCGTAT GTGATGCCGG 35129600
GATGTGAAAG GTTAAAGTTT ATTTTCTGCA AACGACTTGA CATCGTCAGT 35129650
ATTCGATGCC AAGAGTGTAG GTCTCTATGT CTTCCAGTTC GGATTCGAAA 35129700
GCTCTTTGGT GGGGACCTGG GGAAGCCAAC TGAATTAATT TATCGGTGCA 35129750
ATACGGCAGA GCTGTTATTT TTATGGCCTT TATTACAGTG AACAGTGTTT 35129800
CCTTGTTAAG ATTTATATAT TTATATGATC AAAAGTGCCC AAGAAATTAA 35129850
AGCTGTATTA TTAAATCCTA ACAGTGGTTC AGTTTTCTGT AGCCTTCTGG 35129900
GATAGATAGT AAATTGTTTT GTATTATATT CAATTTTCTA TGGTGTAGAC 35129950
TGTAAGCCAA AGGAAAGAAG ACAGTTTCTT AAGATAGCAA ACTGGGCGTT 35130000
TTGTTGCAGG GAGTCCTGAA GTTGTATTTG ACAGTTTGAC TGGAAGCTTA 35130050
GTTTATCAAA GCAAGAATAT TAATGTATGG TTGTCAGTGT TCTATTTATA 35130100
GCACATCAAT TAAAATGTTA AATTTCTTTG GCAGAGATTT CCTTCTGGAG 35130150
ATTATTTACC ATAGTTTGTT TGGAAATGAG CCTGTCGTTC ATGTTTTTAG 35130200
TAGTGGGGTA AGAAAAGGCA ACTTCCTTCT TTGGAAGGTT TGTGTGAAGA 35130250
GCCAACCTCG CTGCTCTTCT CACAGTTCTG CGGTTCTTCC CCCGAGTCTC 35130300
GTTGAGCAGA AGGGTTTTGT TCTTTCACTT TGGGGCACAC gggtccctta 35130350
ccaacaaact actatttcct aagttggttc tcccaggtag tactcagctg 35130400
agtctcttgc tgtctgtcag ggtaaagtcg gtaatggaac
Side by Side Alignment
00000011 cggccgagcgggccatggaggaaggacccgccgtcggaaccctgtctcga 00000060
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35128851 cggccgagcgggccatggaggaaggacccgccgtcggaaccctgtctcga 35128900
00000061 gaggtctctaccgaggaggccgagccgttgggcgccgcgtggagcgggga 00000110
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35128901 gaggtctctaccgaggaggccgagccgttgggcgccgcgtggagcgggga 35128950
00000111 cagcggccacgtctcgcagagccacagcagcgcgtccgggccgtgggacg 00000160
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35128951 cagcggccacgtctcgcagagccacagcagcgcgtccgggccgtgggacg 35129000
00000161 atgacggccccgaggacgcgccgggccgcgacctgccgctgctgcgccgc 00000210
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129001 atgacggccccgaggacgcgccgggccgcgacctgccgctgctgcgccgc 35129050
00000211 gccgcctcgggctacgcctccagcctgctgcccagcgcgggaccgaggcc 00000260
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129051 gccgcctcgggctacgcctccagcctgctgcccagcgcgggaccgaggcc 35129100
00000261 agaggtggaggcgctggacgccagcctggaggagctgctggccaaggtgg 00000310
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129101 agaggtggaggcgctggacgccagcctggaggagctgctggccaaggtgg 35129150
00000311 acgagttcgtgggcatgctggacatgatccgcggggactcgtcgcatgtg 00000360
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129151 acgagttcgtgggcatgctggacatgatccgcggggactcgtcgcatgtg 35129200
00000361 gtgggcgagggcgtgccccggatccacgctaaggcggccgagatgaggcg 00000410
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129201 gtgggcgagggcgtgccccggatccacgctaaggcggccgagatgaggcg 35129250
00000411 catctacggccggatcgacaagctggaggccttcgtgcggatgatcggga 00000460
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129251 catctacggccggatcgacaagctggaggccttcgtgcggatgatcggga 35129300
00000461 gcagcgtggccaggatggaggagcaggtcgccaaggccgaagccgagctg 00000510
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129301 gcagcgtggccaggatggaggagcaggtcgccaaggccgaagccgagctg 35129350
00000511 gggaccttcccgcgggccttccggaggctgctgcataccatcagcgtccc 00000560
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129351 gggaccttcccgcgggccttccggaggctgctgcataccatcagcgtccc 35129400
00000561 cgctctcttcaggtcggcgcccagcgggccccagcgcgcggcgtacgagc 00000610
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129401 cgctctcttcaggtcggcgcccagcgggccccagcgcgcggcgtacgagc 35129450
00000611 cgccagtcctgtttcggaccgaggaccacttccctggctgcggtgacaga 00000660
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129451 cgccagtcctgtttcggaccgaggaccacttccctggctgcggtgacaga 35129500
00000661 ccgcagctctgagcgtgtgcgcctccaccgcatgaggactccagcgagac 00000710
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129501 ccgcagctctgagcgtgtgcgcctccaccgcatgaggactccagcgagac 35129550
00000711 tcttgtcccaagtgttaagaaatcctgtgaactggcgtatgtgatgccgg 00000760
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129551 tcttgtcccaagtgttaagaaatcctgtgaactggcgtatgtgatgccgg 35129600
00000761 gatgtgaaaggttaaagtttattttctgcaaacgacttgacatcgtcagt 00000810
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129601 gatgtgaaaggttaaagtttattttctgcaaacgacttgacatcgtcagt 35129650
00000811 attcgatgccaagagtgtaggtctctatgtcttccagttcggattcgaaa 00000860
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129651 attcgatgccaagagtgtaggtctctatgtcttccagttcggattcgaaa 35129700
00000861 gctctttggtggggacctggggaagccaactgaattaatttatcggtgca 00000910
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129701 gctctttggtggggacctggggaagccaactgaattaatttatcggtgca 35129750
00000911 atacggcagagctgttatttttatggcctttattacagtgaacagtgttt 00000960
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129751 atacggcagagctgttatttttatggcctttattacagtgaacagtgttt 35129800
00000961 ccttgttaagatttatatatttatatgatcaaaagtgcccaagaaattaa 00001010
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129801 ccttgttaagatttatatatttatatgatcaaaagtgcccaagaaattaa 35129850
00001011 agctgtattattaaatcctaacagtggttcagttttctgtagccttctgg 00001060
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129851 agctgtattattaaatcctaacagtggttcagttttctgtagccttctgg 35129900
00001061 gatagatagtaaattgttttgtattatattcaattttctatggtgtagac 00001110
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129901 gatagatagtaaattgttttgtattatattcaattttctatggtgtagac 35129950
00001111 tgtaagccaaaggaaagaagacagtttcttaagatagcaaactgggcgtt 00001160
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35129951 tgtaagccaaaggaaagaagacagtttcttaagatagcaaactgggcgtt 35130000
00001161 ttgttgcagggagtcctgaagttgtatttgacagtttgactggaagctta 00001210
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35130001 ttgttgcagggagtcctgaagttgtatttgacagtttgactggaagctta 35130050
00001211 gtttatcaaagcaagaatattaatgtatggttgtcagtgttctatttata 00001260
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35130051 gtttatcaaagcaagaatattaatgtatggttgtcagtgttctatttata 35130100
00001261 gcacatcaattaaaatgttaaatttctttggcagagatttccttctggag 00001310
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35130101 gcacatcaattaaaatgttaaatttctttggcagagatttccttctggag 35130150
00001311 attatttaccatagtttgtttggaaatgagcctgtcgttcatgtttttag 00001360
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35130151 attatttaccatagtttgtttggaaatgagcctgtcgttcatgtttttag 35130200
00001361 tagtggggtaagaaaaggcaacttccttctttggaaggtttgtgtgaaga 00001410
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35130201 tagtggggtaagaaaaggcaacttccttctttggaaggtttgtgtgaaga 35130250
00001411 gccaacctcgctgctcttctcacagttctgcggttcttcccccgagtctc 00001460
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35130251 gccaacctcgctgctcttctcacagttctgcggttcttcccccgagtctc 35130300
00001461 gttgagcagaagggttttgttctttcactttggggcacac 00001500
>>>>>>>> |||||||||||||||||||||||||||||||||||||||| <<<<<<<<
35130301 gttgagcagaagggttttgttctttcactttggggcacac 35130340