Results for the job "JHSnlo Tue Jul 13 15:58:33
2004":
Parameters:
PWM threshold: 80
%
Homology threshold: 50 %
Flank length: 15
bp
Plain files:
Raw
TFBSs data
List
of CONREAL aligned TFBSs
CONREAL
alignment
Graphical representation of aligned TFBSs.
Bars represent number of
aligned hits found within 20 bp window calculated in coordinates of the longer
sequence.
Each black line represents an aligned TFBS.
CONREAL:
CONREAL alignment:
Aligned TFBSs are shown in uppercase.
No attempts
were made to align regions not covered by TFBSs (lowercase).
10 20 30 40 50
Lyst_mouseataaaaaagaaagttaaaaaaaagagtttcatgtatgcatatattgttttgatcagtt--
| | | |||| | | | || || | || |
LYST_humantatttcataattcctgtgcaaaaaattatgggagttgttgattctacagcaattcctgtc
10 20 30 40 50 60
Lyst_mouse------------------------------------------------------------
LYST_humanaatttgtagattatctgcttattaatagtttgtattgtttggcagaacttgaaaactacc
70 80 90 100 110 120
Lyst_mouse------------------------------------------------------------
LYST_humangaacgattacagttcaggctttttcccagtacctctggcgttgctgtctcagtgactagg
130 140 150 160 170 180
Lyst_mouse------------------------------------------------------------
LYST_humanaggtgaggagggtggcccttgaaatgccaaactgcctaccgcagcagtctgccagcagcg
190 200 210 220 230 240
Lyst_mouse------------------------------------------------------------
LYST_humantgctgggcccagagccggggatgcagccaaaacatcctggattttacctacagctcccac
250 260 270 280 290 300
Lyst_mouse------------------------------------------------------------
LYST_humancctctggagggactggtctattagggcatatgacactgacagtgcgcactgtatacaaac
310 320 330 340 350 360
Lyst_mouse------------------------------------------------------------
LYST_humancgtgtttgaacaggagtcggttggaaaatacaccactgcactgaattacttctgcagtgg
370 380 390 400 410 420
Lyst_mouse------------------------------------------------------------
LYST_humanctttgcaaagctctttttgtttcttgaaagaagccgacggtaaccattacaatatggctt
430 440 450 460 470 480
60 70
Lyst_mouse-----------------------------------------------CCACACTCTattc
| | |||| |
LYST_humantttccaggtcccagaggaaggctaggggtgccttgtgggtaacccttTCTCCCTCTcctg
490 500 510 520 530 540
80 90 100 110 120 130
Lyst_mousecctcctttccaactcctcccttatctgcacCACTCCtattccctatgctcagttttcata
|| | ||| || |
LYST_humanact---------------------------CCTTCCcgttatttc---------------
550
140 150 160 170 180 190
Lyst_mousetgccctgtttttctctcttttttaaaatcccagagtcacttagtgttgccagtgtacata
LYST_human------------------------------------------------------------
200 210 220 230 240 250
Lyst_mousegatgtggagccctctgctggagcataggaaacctcttaggtgctgcatccctgaggcaaa
LYST_human------------------------------------------------------------
260 270 280 290 300 310
Lyst_mousegtgactgagcctcctagcagtcatcattgcctgtaactcttcaggggaggagcttcctga
LYST_human------------------------------------------------------------
320 330 340 350 360 370
Lyst_mouseccacctcccctcttcatgctggggttttgtctgcattgatcttgtgtaggtcttgattat
LYST_human------------------------------------------------------------
380 390 400 410 420 430
Lyst_mousetcagtcacagccactgtcagtttctctgtgaaactttcctgttgtattgtggaaaacgct
LYST_human------------------------------------------------------------
440 450 460 470 480 490
Lyst_mousegttttactataggcatctgttgcttctggttctcacaatctCTCTATCTCCTTCCTACat
||||||| | |||| |
LYST_human-----------------------------------------TTCTATCTTCATCCTCTag
560 570
Lyst_mouseccctgagt----------------------------------------------------
|||
LYST_humanacctacacaatgggacaggttgacagtctgtgttgaatggaagaggcggacgatgcgctt
580 590 600 610 620 630
Lyst_mouse------------------------------------------------------------
LYST_humangtgtttggtgcttctcaaacggtgctcgcactccccagggtctgacgcagcccactacgc
640 650 660 670 680 690
500 510 520 530 540 550
Lyst_mouse-----CTTGGGAGGAAGGgtgtgatacagatgtcccatttgtggctgaacaatccgcaat
| |||||||| | | | | | | | | || || |
LYST_humanagagcCCTGGGAGGAGGTgcggacccagggtacgacccccgaccgctgagaaacccagac
700 710 720 730 740 750
560 570 580 590 600 610
Lyst_mousectcatattctttgcatattgaccagttatgggtccctgtgctaaattactgtctactaca
| |||| | || ||| |
LYST_humancgggccccggctgcagccccgcgggtcggcccgcccccctgccttccctattggctcggc
760 770 780 790 800 810
620 630 640 650 660 670
Lyst_mouseagcttctctgattccagttgagagatgcactaatttaggagttggtgctctctgtgctag
|| | | | | | || || | | | |
LYST_humanagttccacgcgtcacgcctgcgacgccggcgctgccctcccagaggaggcggggcttaca
820 830 840 850 860 870
680
Lyst_mouseatgtgtagctttgcc---------------------------------------------
|| |
LYST_humancgcgcgaggcggagccaagggcgcacgcgcagacgagcgggtctgggtccggacgagggg
880 890 900 910 920 930
690 700 710 720 73
Lyst_mouse--------------------TCATTCTCagcttgggtgGTCGGGTGGGGTTGcccattgg
||| | || ||| |||| |||| || | ||
LYST_humanagggagggggtggtgttctcGGTTTCCTgggttacctgGGCGGGCGGGGGTGgggagtgc
940 950 960 970 980 990 1
0 740 750 760 770 780 79
Lyst_mousegtagtactccctgtataaggtgtggggctctgcccctttcccaggtggcaggttattagg
| | | | | | || | | | | || || |
LYST_humangcggcggcggcggcagcggcgtcggctcggggttctccgggagagggggagtgcgcggcg
000 1010 1020 1030 1040 1050 1
0 800 810 820 830 840 85
Lyst_mouseggtcagcaggtgagtgggtaggcaaagctacctgtgaggtggttctcagaggtcctctgc
| | | ||| ||||| | | |
LYST_humangccgcagctgccacaaaccaggtgaagctttgttctaag---------------------
060 1070 1080 1090
0 860 870 880 890 900 91
Lyst_mousetggctaggatttctgtggttttgggattacaaataattaattgactgttacttgtatcac
LYST_human------------------------------------------------------------
0 920 930 940 950 960 97
Lyst_mouseatacaaaaacaggctactgatttttttatcagaactttattaacattatttgattattat
LYST_human------------------------------------------------------------
0 980 990 1000 1010 1020 103
Lyst_mousetgccactgatgtatttgtatcttcttcttataggtgaagccttatgctgagacagTTTTA
|
LYST_human-------------------------------------------------------AATAT
1100
0 1040 1050 1060 1070 1080 109
Lyst_mouseTCTAGTTCATGAACCCAAATTatatacaagctgaatgttacagaagtgctgaaagactgc
| | | |
LYST_humanTTGTTTCATCTAGTTTATGAG---------------------------------------
1110 1120
0
Lyst_mousetctgtc-
LYST_human------T
CONREAL aligned hits:
| Matrix |
Identity |
Seq1 from |
Seq1 to |
Seq2 from |
Seq2 to |
Strand |
Score1 |
Score2 |
Rel.Score1 |
Rel.Score2 |
Factor |
| M00706* |
0.59 |
59 |
67 |
528 |
536 |
2 |
6.736 |
8.285 |
0.82 |
0.88 |
Pro
only |
| M00704* |
0.53 |
102 |
107 |
544 |
549 |
2 |
5.117 |
5.117 |
0.82 |
0.82 |
Pro
only |
| M00077 |
0.51 |
473 |
481 |
559 |
567 |
2 |
9.212 |
7.598 |
0.95 |
0.89 |
GATA-3 |
| M00462* |
0.50 |
473 |
482 |
559 |
568 |
2 |
6.019 |
6.884 |
0.86 |
0.90 |
Pro
only |
| M00076 |
0.50 |
473 |
482 |
559 |
568 |
2 |
7.171 |
5.695 |
0.92 |
0.86 |
GATA-2 |
| M00075 |
0.50 |
473 |
482 |
559 |
568 |
2 |
7.002 |
4.995 |
0.91 |
0.83 |
GATA-1 |
| M00789* |
0.54 |
474 |
480 |
560 |
566 |
2 |
8.810 |
8.810 |
0.96 |
0.96 |
Pro
only |
| M00771* |
0.50 |
477 |
488 |
563 |
574 |
1 |
7.465 |
8.764 |
0.81 |
0.84 |
Pro
only |
| M00655* |
0.51 |
481 |
487 |
567 |
573 |
1 |
6.628 |
7.813 |
0.86 |
0.91 |
Pro
only |
| M00658* |
0.55 |
482 |
489 |
568 |
575 |
2 |
5.823 |
7.706 |
0.80 |
0.87 |
Pro
only |
| M00141 |
0.56 |
500 |
508 |
703 |
711 |
1 |
9.734 |
8.529 |
0.92 |
0.88 |
Lyf-1 |
| M00807* |
0.54 |
501 |
511 |
704 |
714 |
1 |
7.286 |
7.286 |
0.83 |
0.83 |
Pro
only |
| M00695* |
0.54 |
502 |
508 |
705 |
711 |
1 |
6.873 |
6.873 |
0.89 |
0.89 |
Pro
only |
| M00083 |
0.53 |
502 |
509 |
705 |
712 |
1 |
5.820 |
5.820 |
0.80 |
0.80 |
MZF1 |
| M00695* |
0.51 |
505 |
511 |
708 |
714 |
1 |
5.186 |
8.909 |
0.82 |
0.97 |
Pro
only |
| M00655* |
0.51 |
506 |
512 |
709 |
715 |
2 |
6.628 |
7.056 |
0.86 |
0.88 |
Pro
only |
| M00500* |
0.50 |
690 |
697 |
958 |
965 |
1 |
4.528 |
8.458 |
0.83 |
0.96 |
Pro
only |
| M00498* |
0.50 |
690 |
697 |
958 |
965 |
1 |
4.668 |
7.526 |
0.85 |
0.95 |
Pro
only |
| M00499* |
0.50 |
690 |
697 |
958 |
965 |
1 |
4.850 |
5.985 |
0.85 |
0.90 |
Pro
only |
| M00493* |
0.50 |
690 |
697 |
958 |
965 |
1 |
5.164 |
6.361 |
0.84 |
0.89 |
Pro
only |
| M00497* |
0.50 |
690 |
697 |
958 |
965 |
1 |
5.224 |
6.071 |
0.87 |
0.91 |
Pro
only |
| M00196 |
0.53 |
708 |
720 |
976 |
988 |
1 |
8.082 |
12.960 |
0.81 |
0.91 |
Sp1 |
| M00008 |
0.53 |
710 |
719 |
978 |
987 |
1 |
7.870 |
7.099 |
0.86 |
0.83 |
Sp1 |
| M00378 |
0.50 |
710 |
721 |
978 |
989 |
2 |
10.149 |
6.681 |
0.96 |
0.84 |
Pax-4 |
| M00083 |
0.53 |
712 |
719 |
980 |
987 |
1 |
6.414 |
6.039 |
0.82 |
0.81 |
MZF1 |
| M00462* |
0.57 |
1025 |
1034 |
1105 |
1114 |
2 |
7.522 |
5.454 |
0.93 |
0.84 |
Pro
only |
| M00789* |
0.57 |
1026 |
1032 |
1106 |
1112 |
2 |
9.353 |
5.312 |
0.97 |
0.83 |
Pro
only |
| M00011 |
0.56 |
1027 |
1035 |
1107 |
1115 |
2 |
12.328 |
8.328 |
0.92 |
0.81 |
Evi-1 |
| M00616* |
0.63 |
1029 |
1039 |
1109 |
1119 |
2 |
8.975 |
10.454 |
0.82 |
0.86 |
Pro
only |
| M00486* |
0.69 |
1032 |
1040 |
1112 |
1120 |
2 |
4.365 |
7.699 |
0.82 |
0.96 |
Pro
only |
| M00159 |
0.74 |
1038 |
1050 |
1118 |
1130 |
2 |
5.481 |
5.271 |
0.81 |
0.80 |
C/EBP |
| M00690* |
0.74 |
1043 |
1050 |
1123 |
1130 |
1 |
8.570 |
6.363 |
0.95 |
0.87 |
Pro
only |