CONREAL server

Results for the job "0JHCcH Wed Jul 21 17:39:34 2004":

Parameters:
  PWM threshold: 80 %
  Homology threshold: 50 %
  Flank length: 15 bp

Plain files:
  Raw TFBSs data
  List of CONREAL aligned TFBSs
  CONREAL alignment

Graphical representation of aligned TFBSs.

Bars represent number of aligned hits found within 20 bp window calculated in coordinates of the longer sequence.
Each black line represents an aligned TFBS.

CONREAL:

CONREAL alignment:

Aligned TFBSs are shown in uppercase.
No attempts were made to align regions not covered by TFBSs (lowercase).

                  10        20        30        40        50        60
Rab27a/ashagattctgtaccggtccagtttattggggttgcttacaagcgtgggtgactccagtagct
             ||     ||                                                
RAB27A/GS2(human)gccttagactccatag--------------------------------------------
                  10                                                  

                  70        80        90       100       110       120
Rab27a/ashgccatctacagattgagaaactgcactgtggtgcagtcctagtagctacagacaggaggg
                                                                      
RAB27A/GS2(human)------------------------------------------------------------
                                                                      

                 130       140       150       160       170       180
Rab27a/ashgtgactgggtgtgcaggtgggtgggacagctggaccgcggagtttgtggtggcaggccct
                                                                      
RAB27A/GS2(human)------------------------------------------------------------
                                                                      

                 190       200       210       220       230       240
Rab27a/ashagggatgaatgaaactgcatggacagaacttagcccagtcttccttctcagcattttgct
                                                                      
RAB27A/GS2(human)------------------------------------------------------------
                                                                      

                 250       260       270       280       290       300
Rab27a/ashtgtcttggaagtggaattctgaaagcaacaGGGCAGGCCCAAAGGCCagtgtgaagcgca
                                        || ||||||||| |||   |||  |   | 
RAB27A/GS2(human)------------------------------GGACAGGCCCAAGGGCTgctgttcacacct
                                          20        30        40      

                 310       320       330       340       350          
Rab27a/ashgaaccacctttggacggatttggctaatgtcctccatccccaggttgagacc--------
                |  |  || ||||     |     ||||              ||          
RAB27A/GS2(human)cctggccactgagagggatgaacttggctgcctctgagtgggaaccacgaggtctgaccc
            50        60        70        80        90       100      

                                       360       370       380        
Rab27a/ash------------------------CAGACTGctcacagaaaaccctaggcatcggtagaa
                                  |   | |  |  ||  |  ||   |   | |    |
RAB27A/GS2(human)cctacgcagtcccaggttcactacCCCGCAGgccggagcgacaccgttggcgctgggaga
           110       120       130       140       150       160      

             390       400       410       420       430       440    
Rab27a/ashg----GCCACTAGGaggcagcagagggtcataggctgctccggaccctgccgggtcttag
               ||| || || ||||||| |||  |  ||| | || | |||   | ||| || |  
RAB27A/GS2(human)agagaGCCGCTGGGtggcagcaaaggcgcgcaggtttcttccgacagaggcggttcctta
           170       180       190       200       210       220      

             450       460       470       480       490       500    
Rab27a/ashcatgttatgccaccccataatttccctcttactgtgcagTAACTGCCtgccCTAACAGTG
                         | |  |||                 ||||   ||| |||||| | 
RAB27A/GS2(human)acatactgtagttttcttcttttt---------------AAACTCATtgctCTAACACTC
           230       240       250                      260       270 

             510       520       530       540        550       560   
Rab27a/ashTtttaggacttcagggtgagtgtaatccgagttaga-CTGTGTGcatgTAGACTCCGCtg
          ||  |    | ||| |    | || ||     |    | |||||     |||||||| | 
RAB27A/GS2(human)TtagaaatttacagtggttttatattcttgaattacaCAGTGTGagcaGAGACTCCGTtt
                280       290       300       310       320       330 

              570       580       590       600         610       620 
Rab27a/ashgcCATTGCCTTCCAGAATAGTGTTTATTTTCTTCTGactga--ATCTTACCtaTTTTTCT
          |||||| ||| || ||||    || ||||| |||   |  |   | |||| |||||||||
RAB27A/GS2(human)gcCATTTCCTCCCGGAATTACATTGATTTTTTTCCTgcgaaatTTTTTACTtaTTTTTCT
                340       350       360       370       380       390 

                630       640                          650       660  
Rab27a/ashCatcatcgagtccaggaaccccagta-------------------GGCCATGCCCaagct
          |       | | |  | |  || |                      ||| || ||| || 
RAB27A/GS2(human)CccatgttatttccaggaatcctgggcattcccttgccccggaaaCGCCGTGTCCaggcc
                400       410       420       430       440       450 

               670       680                                          
Rab27a/ashgtctccagggaggatgcacagccat-----------------------------------
          | |   ||  ||||  | |||                                       
RAB27A/GS2(human)gacctaagccaggagccgcaggggcgggaagccgggggcagggccgggcctgggacgccg
                460       470       480       490       500       510 

                                                                      
Rab27a/ash------------------------------------------------------------
                                                                      
RAB27A/GS2(human)cctcaggagccgcgcggactcgggaacctcgggcggggccggcgtgagtacgcccggcac
                520       530       540       550       560       570 

                                                 690       700       7
Rab27a/ash---------------------------------------GAAAAAGCTTTTAGGacagac
                                                 |||||  |  |||| |||   
RAB27A/GS2(human)ctccggctgctacggtggcgaccgcgaactgatgccgtgGAAAACACCCTTAGAacatgg
                580       590       600       610       620       630 

          10       720                          730       740       75
Rab27a/ashctttggagtctccagggcacg-------------------CCTCGCCTTACCCggatcct
          ||||   |      |   | |                   |||||||   | | | ||||
RAB27A/GS2(human)ctttttggggaggtgaataggggagagtccccaaacgacaCCTCGCCGCGCACcggtcct
                640       650       660       670       680       690 

          0       760       770       780       790       800       81
Rab27a/ashggggcaatttgagCTTTTTGTGAATGgctctcttggtctcaaggaaaaccaccctctgtg
           ||          |  ||||| |||| | ||| ||    | |  |  |  || |||    
RAB27A/GS2(human)tggtg--------CAGTTTGTAAATGtccctcctgtgtcccaaaacgaaaacactcctat
                        700       710       720       730       740   

          0         820       830       840       850         860     
Rab27a/ashgttctc--ACACCTTTCAGAAGGGGCGAGGagacccgatccgtgcca--GGCGAGGCGAG
           || |    | |||| ||||| |||  ||  ||  | |    ||  |     ||||||||
RAB27A/GS2(human)attttgtaGCGCCTTCCAGAATGGGGCAGCggaaactagtgttgggacaAAGGAGGCGAG
              750       760       770       780       790       800   

            870       880                                             
Rab27a/ashCAGtcgtttctgtgg---------------------------------------------
          | |    || |  ||                                             
RAB27A/GS2(human)CGGggccttttcggggctcacagaggacccctcggaggcgcggccgccggggagagcgcg
              810       820       830       840       850       860   

                                           890       900       910    
Rab27a/ash--------------------------CTGGGGGCCTGcgggCAGGTGACAGGAGGCGGAG
                                      |||||||       ||||||||||||  || |
RAB27A/GS2(human)acagcaccccgccccccgccagccggGCGGGGGCCGCtcccGAGGTGACAGGAGAAGGCG
              870       880       890       900       910       920   

             920       930         940       950       960       970  
Rab27a/ashGtggaggccgctcagg--ACCCGCCCCCACCGCGCTCTCCTCTACGGGAAGTGATGTGGG
          |  |  |  |   ||     ||  ||||||| ||||||||| ||||||||||||||||||
RAB27A/GS2(human)GgaggtggaggagagaagGTCCCGCCCCACCTCGCTCTCCTTTACGGGAAGTGATGTGGG
              930       940       950       960       970       980   

               980       990      1000      1010      1020      1030  
Rab27a/ashGCCAGACGGAAAATAGCgccaagcacccaaaaaaggccagtcgcacggggtcccgagctc
          ||||| ||||||||| |  | | |  || ||||| | | | ||                 
RAB27A/GS2(human)GCCAGGCGGAAAATACCcgccaacgacccaaaaaaggccggcgg----------------
              990      1000      1010      1020                       

              1040      1050      1060      1070      1080      1090  
Rab27a/ashcatttggaagggagtacctaagggatagagcacAGCGAGGACGCGGCACGTTGGgaatct
                                            | | ||||||||| ||   |||  | 
RAB27A/GS2(human)---------------------------------CGGGTGGACGCGGCGCGCGAGgacccg
                                          1030      1040      1050    

              1100      1110      1120      1130      1140      1150  
Rab27a/ashagcactgcagggacgcaacaccgCAGGGACAGCACcggacagagcaccaaaccgggtgag
          |||   |                | ||||||| || |    | |  ||| ||     |  
RAB27A/GS2(human)agccagg----------------CGGGGACAGGACggcggggcgagccagacaaaaagta
            1060                      1070      1080      1090      11

              1160          
Rab27a/ashgcacagagttctccatc-
           |              | 
RAB27A/GS2(human)accttcctgaagaggaca
          00      1110

CONREAL aligned hits:

Matrix	Identity	Seq1 from	Seq1 to	Seq2 from	Seq2 to	Strand	Score1	Score2	Rel.Score1	Rel.Score2	Factor
M00054	0.57	271	280	17	26	2	6.845	6.986	0.80	0.80	NF-kappaB
M00272	0.57	271	280	17	26	1	7.200	7.636	0.86	0.87	p53
M00272	0.57	271	280	17	26	2	8.741	8.741	0.90	0.90	p53
M00761*	0.57	271	280	17	26	1	7.814	8.048	0.88	0.89	Pro only
M00761*	0.57	271	280	17	26	2	7.110	7.274	0.86	0.87	Pro only
M00727*	0.58	274	281	20	27	2	6.110	6.110	0.81	0.81	Pro only
M00428*	0.58	276	283	22	29	2	5.710	5.443	0.88	0.87	Pro only
M00189	0.55	276	287	22	33	1	8.560	7.194	0.86	0.82	AP-2
M00470*	0.56	277	285	23	31	1	7.605	9.235	0.88	0.93	Pro only
M00469*	0.56	277	285	23	31	1	7.856	8.599	0.92	0.94	Pro only
M00470*	0.54	278	286	24	32	2	7.475	7.948	0.88	0.90	Pro only
M00469*	0.54	278	286	24	32	2	7.824	8.415	0.92	0.94	Pro only
M00468*	0.51	353	359	131	137	2	4.971	5.272	0.82	0.84	Pro only
M00469*	0.59	390	398	172	180	1	6.354	8.056	0.87	0.92	Pro only
M00670*	0.55	484	491	251	258	2	5.713	6.407	0.80	0.83	Pro only
M00042	0.55	496	505	263	272	1	6.664	6.764	0.81	0.81	Sox-5
M00468*	0.57	541	547	309	315	1	5.600	7.069	0.85	0.93	Pro only
M00646*	0.71	552	559	320	327	2	7.680	5.551	0.89	0.80	Pro only
M00792*	0.72	553	561	321	329	1	7.747	8.079	0.94	0.95	Pro only
M00621*	0.71	566	577	334	345	1	7.443	6.858	0.83	0.82	Pro only
M00704*	0.69	566	571	334	339	2	5.761	7.955	0.86	0.97	Pro only
M00141	0.72	571	579	339	347	2	7.093	8.374	0.84	0.88	Lyf-1
M00777*	0.67	573	585	341	353	2	8.432	10.305	0.85	0.90	Pro only
M00498*	0.68	576	583	344	351	2	5.533	6.097	0.88	0.90	Pro only
M00499*	0.68	576	583	344	351	2	6.810	5.488	0.94	0.88	Pro only
M00493*	0.68	576	583	344	351	2	5.395	7.979	0.85	0.96	Pro only
M00496*	0.68	576	583	344	351	2	4.895	5.162	0.84	0.85	Pro only
M00494*	0.68	576	583	344	351	2	4.504	8.075	0.80	0.96	Pro only
M00497*	0.68	576	583	344	351	2	5.114	7.312	0.86	0.97	Pro only
M00130	0.64	581	592	349	360	1	10.432	6.866	0.89	0.81	FOXD3
M00724*	0.63	584	594	352	362	1	11.056	6.250	0.93	0.82	Pro only
M00130	0.60	585	596	353	364	1	10.664	7.477	0.89	0.82	FOXD3
M00747*	0.62	586	592	354	360	1	5.657	5.657	0.81	0.81	Pro only
M00498*	0.53	592	599	360	367	1	3.804	6.097	0.81	0.90	Pro only
M00499*	0.53	592	599	360	367	1	6.530	6.563	0.92	0.93	Pro only
M00497*	0.53	592	599	360	367	1	4.809	4.813	0.85	0.85	Pro only
M00496*	0.50	605	612	375	382	1	4.416	4.759	0.82	0.84	Pro only
M00500*	0.50	615	622	385	392	1	5.383	5.383	0.86	0.86	Pro only
M00498*	0.50	615	622	385	392	1	5.233	5.233	0.87	0.87	Pro only
M00499*	0.50	615	622	385	392	1	6.782	6.782	0.93	0.93	Pro only
M00493*	0.50	615	622	385	392	1	6.131	6.131	0.88	0.88	Pro only
M00496*	0.50	615	622	385	392	1	5.225	5.225	0.86	0.86	Pro only
M00494*	0.50	615	622	385	392	1	5.439	5.439	0.84	0.84	Pro only
M00497*	0.50	615	622	385	392	1	4.146	4.146	0.82	0.82	Pro only
M00272	0.50	648	657	437	446	1	8.192	5.069	0.89	0.81	p53
M00734*	0.51	688	696	611	619	1	10.757	7.036	0.96	0.85	Pro only
M00395	0.51	694	702	617	625	2	5.469	3.701	0.90	0.80	HOXA3
M00695*	0.65	730	736	672	678	2	5.070	5.070	0.81	0.81	Pro only
M00803*	0.64	731	736	673	678	2	5.501	5.501	0.84	0.84	Pro only
M00469*	0.56	734	742	676	684	1	4.834	5.544	0.82	0.84	Pro only
M00415	0.59	763	771	697	705	1	5.741	6.542	0.83	0.86	AREB6
M00473*	0.57	766	775	700	709	2	5.596	5.596	0.81	0.81	Pro only
M00707*	0.52	816	827	752	763	2	6.829	7.305	0.82	0.84	Pro only
M00777*	0.51	821	833	757	769	2	7.823	7.103	0.84	0.82	Pro only
M00498*	0.58	824	831	760	767	2	4.668	5.533	0.85	0.88	Pro only
M00499*	0.58	824	831	760	767	2	6.369	5.749	0.92	0.89	Pro only
M00496*	0.58	824	831	760	767	2	4.122	4.297	0.81	0.82	Pro only
M00497*	0.58	824	831	760	767	2	5.255	5.255	0.87	0.87	Pro only
M00428*	0.55	830	837	766	773	2	5.065	3.948	0.85	0.81	Pro only
M00695*	0.54	855	861	793	799	1	5.070	5.186	0.81	0.82	Pro only
M00695*	0.51	858	864	796	802	1	5.555	5.555	0.83	0.83	Pro only
M00803*	0.53	860	865	798	803	1	5.501	5.501	0.84	0.84	Pro only
M00716*	0.50	861	868	799	806	1	5.570	7.759	0.81	0.91	Pro only
M00807*	0.51	881	891	890	900	1	6.535	9.168	0.81	0.88	Pro only
M00804*	0.59	896	909	905	918	2	9.256	7.677	0.85	0.81	Pro only
M00418	0.61	897	907	906	916	1	7.417	7.417	0.81	0.81	TGIF
M00418	0.61	897	907	906	916	2	7.931	7.931	0.83	0.83	TGIF
M00419	0.60	897	908	906	917	1	8.524	8.524	0.92	0.92	MEIS1
M00801*	0.64	899	904	908	913	2	6.599	6.599	0.89	0.89	Pro only
M00712*	0.58	901	908	910	917	1	6.122	6.122	0.82	0.82	Pro only
M00726*	0.56	903	908	912	917	1	5.105	5.105	0.84	0.84	Pro only
M00695*	0.51	906	912	915	921	1	9.502	4.962	0.99	0.81	Pro only
M00695*	0.57	909	915	918	924	1	9.177	5.779	0.98	0.84	Pro only
M00008	0.57	931	940	942	951	2	7.358	8.672	0.84	0.89	Sp1
M00807*	0.61	932	942	943	953	2	13.061	7.617	0.99	0.84	Pro only
M00378	0.64	934	945	945	956	1	7.873	5.890	0.88	0.82	Pax-4
M00083	0.63	936	943	947	954	2	7.336	7.336	0.86	0.86	MZF1
M00428*	0.63	936	943	947	954	2	5.314	6.175	0.86	0.89	Pro only
M00695*	0.70	939	945	950	956	2	6.466	6.198	0.87	0.86	Pro only
M00716*	0.79	942	949	953	960	2	8.490	5.545	0.94	0.81	Pro only
M00033	0.84	943	956	954	967	2	7.132	7.397	0.82	0.83	p300
M00500*	0.84	946	953	957	964	1	3.852	3.852	0.80	0.80	Pro only
M00396	0.92	951	957	962	968	2	4.052	4.390	0.83	0.85	En-1
M00746*	0.93	953	964	964	975	1	6.938	8.610	0.81	0.86	Pro only
M00025	0.93	953	966	964	977	1	9.661	8.803	0.87	0.84	Elk-1
M00223	0.95	954	962	965	973	2	8.817	12.814	0.87	0.99	STATx
M00777*	0.93	955	967	966	978	2	7.266	7.266	0.82	0.82	Pro only
M00108	0.93	956	965	967	976	1	10.028	10.028	0.88	0.88	NRF-2
M00032	0.93	956	965	967	976	1	8.558	8.558	0.89	0.89	c-Ets-1(p54)
M00033	0.93	956	969	967	980	1	6.991	6.991	0.82	0.82	p300
M00658*	0.92	956	963	967	974	1	8.766	8.766	0.90	0.90	Pro only
M00736*	0.92	956	963	967	974	2	5.782	5.782	0.81	0.81	Pro only
M00431*	0.92	956	963	967	974	2	5.871	5.871	0.83	0.83	Pro only
M00428*	0.92	956	963	967	974	2	5.783	5.783	0.88	0.88	Pro only
M00678*	0.93	957	966	968	977	2	9.929	9.929	0.85	0.85	Pro only
M00771*	0.93	957	968	968	979	2	10.167	10.167	0.88	0.88	Pro only
M00484*	0.93	957	966	968	977	1	6.290	6.290	0.81	0.81	Pro only
M00394	0.92	957	965	968	976	1	5.237	5.237	0.80	0.80	Msx-1
M00655*	0.92	958	964	969	975	2	6.826	6.826	0.87	0.87	Pro only
M00492*	0.92	958	965	969	976	2	10.477	10.477	0.99	0.99	Pro only
M00500*	0.92	958	965	969	976	2	8.420	8.420	0.96	0.96	Pro only
M00498*	0.92	958	965	969	976	2	6.097	6.097	0.90	0.90	Pro only
M00499*	0.92	958	965	969	976	2	7.007	7.007	0.94	0.94	Pro only
M00493*	0.92	958	965	969	976	2	5.387	5.387	0.85	0.85	Pro only
M00496*	0.92	958	965	969	976	2	6.492	6.492	0.91	0.91	Pro only
M00494*	0.92	958	965	969	976	2	4.450	4.450	0.80	0.80	Pro only
M00497*	0.92	958	965	969	976	2	7.890	7.890	0.99	0.99	Pro only
M00240	0.92	959	965	970	976	1	5.733	5.733	0.80	0.80	Nkx2-5
M00747*	0.95	961	967	972	978	2	7.950	7.950	0.89	0.89	Pro only
M00462*	0.95	962	971	973	982	1	4.648	4.648	0.81	0.81	Pro only
M00076	0.95	962	971	973	982	1	4.869	4.869	0.83	0.83	GATA-2
M00075	0.95	962	971	973	982	1	5.965	5.965	0.87	0.87	GATA-1
M00694*	0.95	963	972	974	983	2	8.237	8.237	0.83	0.83	Pro only
M00077	0.95	963	971	974	982	1	6.280	6.280	0.84	0.84	GATA-3
M00396	0.95	963	969	974	980	1	4.504	4.504	0.85	0.85	En-1
M00704*	0.94	963	968	974	979	1	5.285	5.285	0.83	0.83	Pro only
M00801*	0.94	963	968	974	979	2	5.359	5.359	0.84	0.84	Pro only
M00483*	0.95	964	971	975	982	1	9.772	9.772	0.87	0.87	Pro only
M00491*	0.88	964	976	975	987	1	9.457	9.457	0.83	0.83	Pro only
M00690*	0.95	965	972	976	983	2	5.775	5.775	0.85	0.85	Pro only
M00468*	0.95	966	972	977	983	1	5.427	5.427	0.84	0.84	Pro only
M00109	0.82	966	979	977	990	1	6.025	6.431	0.80	0.81	C/EBPbeta
M00751*	0.94	967	972	978	983	1	7.725	7.725	0.89	0.89	Pro only
M00271	0.94	967	972	978	983	1	5.291	5.291	0.82	0.82	AML-1a
M00083	0.92	967	974	978	985	1	6.546	6.546	0.83	0.83	MZF1
M00431*	0.92	967	974	978	985	1	6.122	6.122	0.84	0.84	Pro only
M00428*	0.92	967	974	978	985	1	6.772	6.772	0.92	0.92	Pro only
M00450*	0.90	967	975	978	986	1	6.384	6.384	0.81	0.81	Pro only
M00807*	0.83	968	978	979	989	1	8.296	8.744	0.86	0.87	Pro only
M00646*	0.87	970	977	981	988	1	7.195	7.195	0.87	0.87	Pro only
M00428*	0.84	971	978	982	989	2	5.138	4.870	0.85	0.84	Pro only
M00470*	0.77	973	981	984	992	1	5.217	5.509	0.81	0.82	Pro only
M00469*	0.77	973	981	984	992	1	7.073	7.342	0.89	0.90	Pro only
M00025	0.68	974	987	985	998	1	8.869	8.117	0.84	0.82	Elk-1
M00302	0.67	976	987	987	998	1	7.449	8.013	0.83	0.84	NF-AT
M00492*	0.63	979	986	990	997	2	5.826	5.826	0.82	0.82	Pro only
M00500*	0.63	979	986	990	997	2	4.711	4.711	0.83	0.83	Pro only
M00499*	0.63	979	986	990	997	2	6.485	6.485	0.92	0.92	Pro only
M00493*	0.63	979	986	990	997	2	6.403	6.403	0.89	0.89	Pro only
M00496*	0.63	979	986	990	997	2	7.569	7.569	0.96	0.96	Pro only
M00494*	0.63	979	986	990	997	2	6.701	6.701	0.90	0.90	Pro only
M00497*	0.63	979	986	990	997	2	5.207	5.207	0.87	0.87	Pro only
M00750*	0.62	980	986	991	997	1	9.445	9.445	0.99	0.99	Pro only
M00734*	0.64	981	989	992	1000	1	6.090	7.036	0.82	0.85	Pro only
M00395	0.64	981	989	992	1000	2	4.501	4.501	0.85	0.85	HOXA3
M00083	0.53	1066	1073	1028	1035	1	6.396	5.820	0.82	0.80	MZF1
M00807*	0.51	1069	1079	1031	1041	1	8.516	10.463	0.86	0.92	Pro only
M00428*	0.53	1071	1078	1033	1040	1	4.955	4.955	0.85	0.85	Pro only
M00716*	0.53	1071	1078	1033	1040	1	8.071	8.071	0.92	0.92	Pro only
M00695*	0.54	1072	1078	1034	1040	1	5.663	5.663	0.84	0.84	Pro only
M00803*	0.53	1072	1077	1034	1039	1	5.087	5.087	0.82	0.82	Pro only
M00803*	0.58	1074	1079	1036	1041	1	4.687	4.687	0.80	0.80	Pro only
M00803*	0.58	1074	1079	1036	1041	2	6.643	6.643	0.89	0.89	Pro only
M00803*	0.61	1077	1082	1039	1044	1	4.917	9.046	0.81	1.00	Pro only
M00322*	0.60	1077	1086	1039	1048	2	5.965	7.026	0.80	0.84	Pro only
M00419	0.55	1116	1127	1062	1073	1	6.201	5.634	0.85	0.83	MEIS1
M00792*	0.51	1119	1127	1065	1073	1	6.028	4.766	0.86	0.80	Pro only