Results for the job "eykJlW Mon Jul 26 22:54:20
2004":
Parameters:
PWM threshold: 80
%
Homology threshold: 50 %
Flank length: 15
bp
Plain files:
Raw
TFBSs data
List
of CONREAL aligned TFBSs
CONREAL
alignment
Graphical representation of aligned TFBSs.
Bars represent number of
aligned hits found within 20 bp window calculated in coordinates of the longer
sequence.
Each black line represents an aligned TFBS.
CONREAL:
CONREAL alignment:
Aligned TFBSs are shown in uppercase.
No attempts
were made to align regions not covered by TFBSs (lowercase).
10 20 30 40 50 60
OCA2_(Humagtatctgtgtgtatctgtgcatgtgtgtatctgtgtgtctgtatctgtgtgcctgtgtat
|| | |||| | | | | | | |
p_(Mouse) caggctcacttatagaaactccccaaaaatctataaatgggggcgggggggggttgagca
10 20 30 40 50 60
70 80
OCA2_(Humaatctgtgtctgtgtatctctgtgtgtgt--------------------------------
| || || | | | ||
p_(Mouse) aaatggctcagcaagtaaaggcacttgctgcggaacccagtgacctgactttggtcactg
70 80 90 100 110 120
OCA2_(Huma------------------------------------------------------------
p_(Mouse) gaaaccacacgctagaaggagaaaagtaactcccgcgagttgtctcctgtggcatgcatg
130 140 150 160 170 180
OCA2_(Huma------------------------------------------------------------
p_(Mouse) aacacacacacacacacacacacacacacacacacacacacacacacactcatacaaaat
190 200 210 220 230 240
OCA2_(Huma------------------------------------------------------------
p_(Mouse) agtttaaaaatttaaaagtctgtgaatgatgggggagtggaaagcagctcccttggctgt
250 260 270 280 290 300
OCA2_(Huma------------------------------------------------------------
p_(Mouse) tacagtgactactttaaccctttgctaatctgtatggaggcactggggactgctggattc
310 320 330 340 350 360
90
OCA2_(Huma-------------------------------------------------------CCGTG
| |
p_(Mouse) tgggcactgtgtcatcctgtagttcatgtctgcatgtatgatatgtcttatgtgcCTGCT
370 380 390 400 410 420
100 110 120 130 140 150
OCA2_(HumaTGTGTATCTGTGTGTGTCTctgtatctctgtatctgtatgtatctctgtatctgtatctg
| |||| |||||||||||||
p_(Mouse) TCTGTACCTGTGTGTGTCTc----------------------------------------
430 440
160 170 180 190 200 210
OCA2_(Humatgtgtctgtacctgtgtctgtgtatctgtgtctgagtatctgtatatatttgtgtgtgtc
p_(Mouse) ------------------------------------------------------------
220 230 240 250 260 270
OCA2_(Humatgtgtatctgtgtctgtgtgtatatctgtgtatctgtgtgtatctctgtgcctgtgtgtg
p_(Mouse) ------------------------------------------------------------
280 290 300 310 320 330
OCA2_(Humatgtctctgtgtatctgtgcatgtgtctgtgtgtatctgtgtatgtgtgtctgtgtatctg
p_(Mouse) ------------------------------------------------------------
340 350 360 370 380 390
OCA2_(Humacatgtgtccttgtgtgtcatctgtgtatctgtgtcctgtatctgtgtgtctgtgtattgc
p_(Mouse) ------------------------------------------------------------
400 410 420
OCA2_(HumatgtgtctctgtgtgtgtctcTGTGTATGTGTATct-------------------------
| | | ||||||| |
p_(Mouse) --------------------TCTCTTTGTGTATgtacttcatgagtgttttgggtctgtg
450 460 470 480
430 440 450
OCA2_(Huma------------------GTGTATCTGTg--------------------TCTGTGTATAT
| |||| | | | |||| |
p_(Mouse) catgttgtgtttataactGCATATCCTTccttctatatgggcttttgggTATTTGTACAG
490 500 510 520 530 540
460 470 480
OCA2_(HumaCGtgtctatctctgtatctg-------------------------TGTGTGTGTCTGTgt
||| ||| || | | || | | | ||
p_(Mouse) TTtgtgtatttccatgtaatttatcatttctgtgagcagtctttgCGTATTTATTCATgg
550 560 570 580 590 600
490 500 510 520 530 540
OCA2_(Humagtatctgtgtgtgtctgtgtatctgtgtgtgtctgtgtatctcgtgtgtgtgtctgtgct
|| ||||||| | | | | ||
p_(Mouse) tcatgggtgtgtggtatgatggagctttccttggatg-----------------------
610 620 630
550 560 570 580 590 600
OCA2_(HumagcaggaggggctgtcggcaagtgTAACCTTGgcgtcctagctggagggcctctcagtgcc
|||||||||| | ||| | |
p_(Mouse) -----------------------TAACCTTGgccacactcctgagttggaggagaacaag
640 650 660 670
610 620 630 640
OCA2_(Humacgctgggagagctctgaagggaacagaatgttcactgagc------------------AT
| | | | ||| | | |
p_(Mouse) ataatgagaaagtttatcctcttcagtagacagttcttacaatgcagaacaatttataTT
680 690 700 710 720 730
650 660 670 680 690 700
OCA2_(HumaTTCCCCGTTCTTGTTCataGGGAAAAGcctgtccgcagtcctgggccgcctctttagagg
| | | ||||||| ||| |||| | || | || |
p_(Mouse) TCCTCAGTTCTTGCCTtaaGGTAAAATctgccacgtcctatgccacctatgaaggcttga
740 750 760 770 780 790
710 720 730 740
OCA2_(Humataaagctggaaactatccccgcggagagcgctgtcgg-----------------------
||| | | ||
p_(Mouse) gcttgctacacatggctggaattttccaaaagcctggcttctacagcaaggctctctgtt
800 810 820 830 840 850
750 760
OCA2_(Huma------------------------------------------GGACGCCGgggcggcgtg
|| || || || |
p_(Mouse) ttccagctgaggctcctgcatgctgctggaccattctcaagaGGGGGCTGgagccactga
860 870 880 890 900 910
770 780 790 800 810 820
OCA2_(Humagccttagacggagctgctctcagcccgcgccgccgggggctggggagctgaggggccggg
||||| | ||
p_(Mouse) gcctttcaactttgtgaagg----------------------------------------
920 930
830 840 850 860 870 880
OCA2_(HumaggtgcggagcgggcgagctgtgggcggggccatgtgggcagcTTTGTGGGCGTGGCCggg
| ||||||||||||| |
p_(Mouse) ------------------------------------------TCTGTGGGCGTGGCCagc
940 950
890 900 910 920 930 940
OCA2_(Humaaggggcgtgctacgggcgtggccgcactgtgggcggggccgagtggggagtgctgtgggc
| || || | || | | | | || || ||
p_(Mouse) acagggtgcagtgaggagcacaagctatccaaccctccctctggggctgcaagtgcctgc
960 970 980 990 1000 1010
950 960 970 980 990 1000
OCA2_(Humaggggccgggccgggggcgtgcctgggtgggggacccgctgcgggagcgccgagctccctc
| | | |
p_(Mouse) tgagaaatcttacaccaggg----------------------------------------
1020 1030
1010 1020 1030 1040 1050 1060
OCA2_(HumatgagttcttacttcgaaggCTGTGCTccgctcaccatccagagcggaggtgcggacctta
|||||||| ||| | |||||| |
p_(Mouse) -------------------TTGTGCTccatccacgactcagagcctttggatctggacac
1040 1050 1060 1070
1070 1080 1090 1100 1110
OCA2_(Humaaactcactcctggag---AAAGATCTGCaagtgcgcagagagaagactggcagtggagc-
| | ||| | | ||||| || ||| |||| ||| |
p_(Mouse) tagacttcactgctggagAGAGATCAGCgagtcatcagacagatca-------------G
1080 1090 1100 1110 1120
CONREAL aligned hits:
| Matrix |
Identity |
Seq1 from |
Seq1 to |
Seq2 from |
Seq2 to |
Strand |
Score1 |
Score2 |
Rel.Score1 |
Rel.Score2 |
Factor |
| M00415 |
0.62 |
89 |
97 |
416 |
424 |
1 |
5.139 |
6.164 |
0.80 |
0.84 |
AREB6 |
| M00412 |
0.67 |
94 |
106 |
421 |
433 |
1 |
8.370 |
13.313 |
0.82 |
0.96 |
AREB6 |
| M00415 |
0.74 |
101 |
109 |
428 |
436 |
1 |
5.741 |
5.741 |
0.83 |
0.83 |
AREB6 |
| M00468* |
0.73 |
101 |
107 |
428 |
434 |
1 |
5.600 |
5.600 |
0.85 |
0.85 |
Pro
only |
| M00701* |
0.74 |
104 |
112 |
431 |
439 |
1 |
9.337 |
9.337 |
0.88 |
0.88 |
Pro
only |
| M00792* |
0.74 |
104 |
112 |
431 |
439 |
2 |
7.087 |
7.087 |
0.91 |
0.91 |
Pro
only |
| M00148 |
0.68 |
414 |
420 |
441 |
447 |
2 |
4.466 |
5.573 |
0.81 |
0.86 |
SRY |
| M00148 |
0.57 |
420 |
426 |
447 |
453 |
2 |
4.466 |
4.466 |
0.81 |
0.81 |
SRY |
| M00462* |
0.53 |
429 |
438 |
499 |
508 |
2 |
6.378 |
6.212 |
0.88 |
0.87 |
Pro
only |
| M00076 |
0.53 |
429 |
438 |
499 |
508 |
2 |
4.595 |
5.753 |
0.82 |
0.86 |
GATA-2 |
| M00789* |
0.54 |
430 |
436 |
500 |
506 |
2 |
5.908 |
4.763 |
0.85 |
0.81 |
Pro
only |
| M00159 |
0.60 |
440 |
452 |
530 |
542 |
1 |
5.959 |
7.358 |
0.83 |
0.87 |
C/EBP |
| M00791* |
0.51 |
471 |
483 |
586 |
598 |
2 |
8.066 |
10.596 |
0.84 |
0.90 |
Pro
only |
| M00727* |
0.55 |
569 |
576 |
638 |
645 |
1 |
9.953 |
9.953 |
0.94 |
0.94 |
Pro
only |
| M00770* |
0.52 |
646 |
657 |
733 |
744 |
2 |
6.058 |
5.644 |
0.83 |
0.82 |
Pro
only |
| M00394 |
0.56 |
652 |
660 |
739 |
747 |
1 |
6.475 |
6.146 |
0.87 |
0.85 |
Msx-1 |
| M00500* |
0.55 |
652 |
659 |
739 |
746 |
1 |
4.843 |
5.001 |
0.84 |
0.84 |
Pro
only |
| M00499* |
0.55 |
652 |
659 |
739 |
746 |
1 |
6.172 |
7.452 |
0.91 |
0.96 |
Pro
only |
| M00497* |
0.55 |
652 |
659 |
739 |
746 |
1 |
4.081 |
4.720 |
0.82 |
0.85 |
Pro
only |
| M00396 |
0.59 |
654 |
660 |
741 |
747 |
1 |
4.476 |
4.476 |
0.85 |
0.85 |
En-1 |
| M00761* |
0.55 |
654 |
663 |
741 |
750 |
2 |
6.037 |
7.498 |
0.83 |
0.87 |
Pro
only |
| M00496* |
0.50 |
667 |
674 |
754 |
761 |
2 |
8.047 |
6.428 |
0.98 |
0.91 |
Pro
only |
| M00716* |
0.53 |
745 |
752 |
897 |
904 |
1 |
5.882 |
5.570 |
0.83 |
0.81 |
Pro
only |
| M00731* |
0.63 |
865 |
872 |
935 |
942 |
2 |
8.074 |
7.021 |
0.87 |
0.83 |
Pro
only |
| M00634* |
0.57 |
865 |
876 |
935 |
946 |
2 |
8.174 |
9.502 |
0.83 |
0.87 |
Pro
only |
| M00468* |
0.65 |
866 |
872 |
936 |
942 |
1 |
4.798 |
7.069 |
0.81 |
0.93 |
Pro
only |
| M00751* |
0.67 |
867 |
872 |
937 |
942 |
1 |
7.725 |
7.725 |
0.89 |
0.89 |
Pro
only |
| M00271 |
0.67 |
867 |
872 |
937 |
942 |
1 |
5.291 |
5.291 |
0.82 |
0.82 |
AML-1a |
| M00428* |
0.63 |
867 |
874 |
937 |
944 |
1 |
4.428 |
4.428 |
0.83 |
0.83 |
Pro
only |
| M00196 |
0.56 |
867 |
879 |
937 |
949 |
1 |
11.555 |
11.555 |
0.88 |
0.88 |
Sp1 |
| M00807* |
0.59 |
868 |
878 |
938 |
948 |
1 |
10.838 |
10.838 |
0.93 |
0.93 |
Pro
only |
| M00322* |
0.60 |
869 |
878 |
939 |
948 |
2 |
7.007 |
7.007 |
0.84 |
0.84 |
Pro
only |
| M00008 |
0.60 |
869 |
878 |
939 |
948 |
1 |
8.467 |
8.467 |
0.88 |
0.88 |
Sp1 |
| M00778* |
0.59 |
869 |
879 |
939 |
949 |
1 |
7.530 |
7.530 |
0.83 |
0.83 |
Pro
only |
| M00749* |
0.65 |
870 |
876 |
940 |
946 |
2 |
6.515 |
6.515 |
0.83 |
0.83 |
Pro
only |
| M00716* |
0.63 |
870 |
877 |
940 |
947 |
1 |
7.666 |
7.666 |
0.90 |
0.90 |
Pro
only |
| M00720* |
0.62 |
870 |
878 |
940 |
948 |
1 |
7.093 |
7.093 |
0.83 |
0.83 |
Pro
only |
| M00469* |
0.62 |
870 |
878 |
940 |
948 |
2 |
4.377 |
4.377 |
0.80 |
0.80 |
Pro
only |
| M00761* |
0.60 |
870 |
879 |
940 |
949 |
1 |
6.416 |
6.416 |
0.84 |
0.84 |
Pro
only |
| M00803* |
0.64 |
871 |
876 |
941 |
946 |
1 |
5.501 |
5.501 |
0.84 |
0.84 |
Pro
only |
| M00448* |
0.59 |
871 |
879 |
941 |
949 |
1 |
6.056 |
6.056 |
0.81 |
0.81 |
Pro
only |
| M00624* |
0.54 |
1022 |
1028 |
1033 |
1039 |
2 |
5.295 |
7.655 |
0.85 |
0.94 |
Pro
only |
| M00751* |
0.56 |
1023 |
1028 |
1034 |
1039 |
1 |
6.346 |
6.346 |
0.83 |
0.83 |
Pro
only |
| M00271 |
0.56 |
1023 |
1028 |
1034 |
1039 |
1 |
5.213 |
5.213 |
0.82 |
0.82 |
AML-1a |
| M00462* |
0.75 |
1078 |
1087 |
1092 |
1101 |
1 |
4.939 |
5.503 |
0.82 |
0.84 |
Pro
only |
| M00076 |
0.75 |
1078 |
1087 |
1092 |
1101 |
2 |
4.942 |
5.174 |
0.83 |
0.84 |
GATA-2 |
| M00075 |
0.75 |
1078 |
1087 |
1092 |
1101 |
2 |
4.901 |
5.455 |
0.83 |
0.85 |
GATA-1 |