Results for the job "Db7Bz3 Mon Jul 26 17:25:43 2004":

Parameters:
  PWM threshold: 80 %
  Homology threshold: 50 %
  Flank length: 15 bp


Plain files:
  Raw TFBSs data
  List of CONREAL aligned TFBSs
  CONREAL alignment

Graphical representation of aligned TFBSs.

Bars represent number of aligned hits found within 20 bp window calculated in coordinates of the longer sequence.
Each black line represents an aligned TFBS.

CONREAL:



CONREAL alignment:

Aligned TFBSs are shown in uppercase.
No attempts were made to align regions not covered by TFBSs (lowercase).

                  10        20        30        40                   5
OCA1_(Humacaaagtctttaagcccctccatagattggtcccaggttta-----------ATTTTCTAt
           | |            |    |    |     ||   | |           ||||||   
Tyr_(mouse)aagaaaagaagcagagcaggctgacattccagcattatcaggaaagcaatgATTTTCCTa
                  10        20        30        40        50        60

          0        60        70                                       
OCA1_(Humagatgtgtggaggcctcagtttaatgct-------------------------------CC
          ||| |  | || ||     || |                                   ||
Tyr_(mouse)gatttccgcagccccagtgttcagataaacggtttcctcaaaccttcacttcctttctCC
                  70        80        90       100       110       120

          80        90       100       110       120       130       1
OCA1_(HumaAACTTgatAGATGAAACAcagttcccacctctacacatttcccctgtctcaggagttgta
           ||   ||| || |||   |   | || || |    ||    |       || ||     
Tyr_(mouse)TACAGtatAAATTAAAAGaaccactcagcttttagtatgaagcagcatagagaagggagt
                 130       140       150       160       170       180

          40       150       160       170       180       190       2
OCA1_(Humatatattctcagttgtctgtccaacttatgcccactctttgagatattaatcaaggcactc
          |  |     |  | | | ||      || | || | |      |          |  || 
Tyr_(mouse)tccaaagagacgtttgtttcttgaccattctcattatccttctttcatggagcagtgcta
                 190       200       210       220       230       240

          00       210       220       230       240       250       2
OCA1_(Humaccttgataacacttgcatattattatcaaaattatgcaattctttctaatatcagcccac
               |  |  |                                                
Tyr_(mouse)ttcaaaccatccagta--------------------------------------------
                 250                                                  

          60       270       280       290       300       310       3
OCA1_(HumaaAATACATCTCttccattaaaagtttgacttaattatctatactactcatttgaaaacta
           | | |||  ||                                                
Tyr_(mouse)-AGTCCATTACt------------------------------------------------
            260                                                       

          20       330       340       350       360       370       3
OCA1_(Humaacatagttaagttgtatttttagccatgaatttcagtttccctagctcactatacacaga
                                                                      
Tyr_(mouse)------------------------------------------------------------
                                                                      

          80       390       400       410       420       430       4
OCA1_(Humagaaggaacttttgaaataattgagatgatcaaaaatatttgctgaagaaatatatttctc
                                                                      
Tyr_(mouse)------------------------------------------------------------
                                                                      

          40       450       460       470       480       490       5
OCA1_(Humactttttcattcactcactaattgagaatgtctttgcacaaaacacattgcaaaaacattt
                                                                      
Tyr_(mouse)------------------------------------------------------------
                                                                      

          00       510       520       530       540       550       5
OCA1_(HumatcaaaaaaattcctAATTTCTAgAATTGATAGGAAAAacaatatggctacagcattggag
                         | ||| | | || ||  | ||||                      
Tyr_(mouse)--------------CACTTCCAcATTTTATGAGCAAAa----------------------
                        270       280       290                       

          60       570       580       590       600       610       6
OCA1_(HumaagagagagaaaggagagaGGAGAAAGGAGAGAGAGAGaaaggagagaggagagagacaga
                              | ||| |||||| |||| ||                    
Tyr_(mouse)------------------TAATAAAAGAGAGATAGAGtaa--------------------
                                  300       310                       

          20       630       640       650       660       670       6
OCA1_(Humaggagagagagagaggatagaggggagagagagagaggagagagacagaggagagagagag
                                                                      
Tyr_(mouse)------------------------------------------------------------
                                                                      

          80       690       700       710       720       730       7
OCA1_(HumaaggatagaggggagagagagggagagggaGAGAGAGGGAGAGAGAGGGAGAGAGAGAGAG
                                       ||  || |||||||||| |||||||||||||
Tyr_(mouse)-----------------------------GAATGAAGGAGAGAGAGAGAGAGAGAGAGAG
                                           320       330       340    

          40       750       760       770       780       790        
OCA1_(HumaAGAGAGGgagaGAGAGAGAGAAAGAGAGAGAGAGGGAGAGAGAGAGAGAGAG--------
          ||||||     |||||||||| ||||||||||||| ||||||||||||||||        
Tyr_(mouse)AGAGAGA----GAGAGAGAGAGAGAGAGAGAGAGGAAGAGAGAGAGAGAGAGagagagag
             350           360       370       380       390       400

                                                       800       810  
OCA1_(Huma--------------------------------------CTCTTTAACgtgagatatcccc
                                                 | |||        | |  |  
Tyr_(mouse)agagagagagagagagagagagagagagagagagagagGTGTTTTCTtaactagaaactt
                 410       420       430       440       450       460

                  820       830               840       850       860 
OCA1_(Humaaca---ATGAAGCAaatcgccca--------GTTATCAAAGTGAGCTATCCTTaggagtt
                 |||||||  || || |          || |||||| || |||| || | |   
Tyr_(mouse)tatgcaTTGAAGCAgttcaccaaaataacaaAGTAACAAAGTAAGATATCTTTggaataa
                 470       480       490       500       510       520

                870       880       890       900       910       920 
OCA1_(HumagtcagaaaatgcatCAGGATTATCAGAGAAAAGTAtcagaaagattttttttTCTGATAC
             |          || ||| ||||  ||||| |   ||  |  | ||||   |||||  
Tyr_(mouse)tcaatt--------CAAGATAATCAAGGAAAAATGagaggcaactattttagACTGATTA
                         530       540       550       560       570  

                930       940       950       960       970           
OCA1_(HumaGTtGTATAAAATAAACAAACTGAAattcaataACATATAAGGAATTCtgtct--------
           || ||||||||||| || || |  ||     | ||||||| |||  | |          
Tyr_(mouse)CTtTTATAAAATAAATAAGCTCAGcttagcc-AGATATAAGCAATATtctgagttctgaa
               580       590       600        610       620       630 

                                                                      
OCA1_(Huma------------------------------------------------------------
                                                                      
Tyr_(mouse)gaaaaatttttgacaaaatgagttctataaatgttattgtctacttatgatctctaaata
                640       650       660       670       680       690 

                                                                      
OCA1_(Huma------------------------------------------------------------
                                                                      
Tyr_(mouse)caacaggcttgtattcagaatctagatgtttcatgacctttattcataagagatgatgta
                700       710       720       730       740       750 

                                                                      
OCA1_(Huma------------------------------------------------------------
                                                                      
Tyr_(mouse)ttcttgatactacttctcatttgcaaattccaattattattaatttcatatcaattagaa
                760       770       780       790       800       810 

                                                 980       990      10
OCA1_(Huma-----------------------------------GGGCTCTGaagacaatctctctctg
                                             ||||| || | | | ||        
Tyr_(mouse)taatatatcttccttcaatttagttacctcactatGGGCTATGtacaaactccaagaaaa
                820       830       840       850       860       870 

          00      1010      1020      1030      1040      1050      10
OCA1_(Humacatattgagttcttcaaacattgtagcctctttatggtctctgagaaataactaccttaa
            |      |        ||    |       |  |            | |     ||  
Tyr_(mouse)agttagtcatgtgctttgcagaagataaaagcttagtgtaaaacaggctgagagtatttg
                880       890       900       910       920       930 

          60      1070      1080      1090      1100      1110      11
OCA1_(Humaacccataatctttaatacttcctaaactttcttaataagagaagctctattcctgacact
          |   |  |     | |  ||    |  | |      ||           |  ||      
Tyr_(mouse)atgtaagaaggggagtggttatataggtcttagccaaaacatgtgatagtcactccaggg
                940       950       960       970       980       990 

          20      1130      1140      1150      1160      1170      11
OCA1_(Humaacctctcatttgcaaggtcaaatcatcattagttttgtagtctattaactgggtttgctt
              ||       |||                                            
Tyr_(mouse)gttgctggaaaagaagt-------------------------------------------
               1000                                                   

          80      1190      1200      1210      1220      1230      12
OCA1_(Humaaggtcaggcattattattactaaccttattgttaatattctaaccataagaattaaacta
                                                                      
Tyr_(mouse)------------------------------------------------------------
                                                                      

          40      1250      1260      1270      1280      1290      13
OCA1_(Humattaatggtgaatagagtttttcactttaacataggcctatcccactggtgggatacgagc
                                                                      
Tyr_(mouse)------------------------------------------------------------
                                                                      

          00      1310      1320      1330      1340      1350      13
OCA1_(Humacaattcgaaagaaaagtcagtcatgtgcttttcagaggatgaaagcttaagataaagact
                                                                      
Tyr_(mouse)------------------------------------------------------------
                                                                      

          60      1370      1380      1390      1400      1410      14
OCA1_(Humaaaaagtgtttgatgctggaggtgggagtggtattatataggtctcagccaagacatgtga
                                                                      
Tyr_(mouse)------------------------------------------------------------
                                                                      

          20      1430      1440      1450      1460      1470      14
OCA1_(HumataatcactgtagtagtagctggaaagagaaatCTGTGACTCCAATTAGCCAgttcctgca
                                          ||||||| |  |||| ||  ||  ||||
Tyr_(mouse)--------------------------------CTGTGACACTCATTAACCTattggtgca
                                        1010      1020      1030      

          80      1490      1500  
OCA1_(Humagaccttgtgaggactagaggaaga
          ||  ||||  |  ||| ||||  |
Tyr_(mouse)gattttgtatgatctaaaggagaa
          1040      1050      1060

CONREAL aligned hits:

Matrix Identity Seq1 from Seq1 to Seq2 from Seq2 to Strand Score1 Score2 Rel.Score1 Rel.Score2 Factor
M00500* 0.50 41 48 52 59 1 4.789 7.374 0.84 0.93 Pro only
M00499* 0.50 41 48 52 59 1 7.550 6.908 0.97 0.94 Pro only
M00493* 0.50 41 48 52 59 1 6.016 6.889 0.88 0.92 Pro only
M00496* 0.50 41 48 52 59 1 5.614 6.930 0.87 0.93 Pro only
M00494* 0.50 41 48 52 59 1 5.507 6.810 0.85 0.90 Pro only
M00468* 0.59 77 83 119 125 2 4.798 5.600 0.81 0.85 Pro only
M00747* 0.57 87 93 129 135 2 5.657 5.657 0.81 0.81 Pro only
M00498* 0.55 89 96 131 138 2 5.233 3.965 0.87 0.82 Pro only
M00630* 0.54 260 268 257 265 2 6.450 6.403 0.85 0.85 Pro only
M00704* 0.56 264 269 261 266 2 7.479 5.761 0.95 0.86 Pro only
M00500* 0.55 513 520 268 275 1 6.011 7.198 0.88 0.92 Pro only
M00498* 0.55 513 520 268 275 1 4.563 6.961 0.84 0.93 Pro only
M00499* 0.55 513 520 268 275 1 7.769 7.430 0.98 0.96 Pro only
M00493* 0.55 513 520 268 275 1 7.410 5.750 0.94 0.86 Pro only
M00496* 0.55 513 520 268 275 1 6.071 5.853 0.89 0.88 Pro only
M00494* 0.55 513 520 268 275 1 6.468 5.321 0.89 0.84 Pro only
M00471* 0.63 522 529 277 284 2 7.054 6.404 0.84 0.81 Pro only
M00770* 0.52 524 535 279 290 1 6.853 6.204 0.86 0.84 Pro only
M00286 0.52 577 590 292 305 1 7.704 6.565 0.83 0.81 GKLF
M00498* 0.55 578 585 293 300 2 6.097 4.829 0.90 0.85 Pro only
M00499* 0.55 578 585 293 300 2 6.620 4.403 0.93 0.83 Pro only
M00496* 0.55 578 585 293 300 2 6.134 4.950 0.89 0.84 Pro only
M00632* 0.55 579 590 294 305 1 10.801 9.493 0.90 0.87 Pro only
M00286 0.61 581 594 296 309 1 9.118 7.644 0.87 0.83 GKLF
M00286 0.64 582 595 297 310 1 6.914 7.469 0.82 0.83 GKLF
M00077 0.67 587 595 302 310 1 5.599 9.212 0.82 0.95 GATA-3
M00286 0.82 708 721 314 327 1 6.393 7.975 0.80 0.84 GKLF
M00286 0.82 709 722 315 328 1 6.858 7.117 0.81 0.82 GKLF
M00033 0.82 711 724 317 330 1 8.095 7.242 0.86 0.83 p300
M00286 0.82 712 725 318 331 1 10.063 8.206 0.89 0.85 GKLF
M00286 0.82 713 726 319 332 1 9.563 6.914 0.88 0.82 GKLF
M00649* 0.82 715 722 321 328 1 6.920 6.920 0.81 0.81 Pro only
M00077 0.85 716 724 322 330 1 5.599 5.599 0.82 0.82 GATA-3
M00286 0.84 717 730 323 336 1 7.258 7.258 0.82 0.82 GKLF
M00077 0.85 718 726 324 332 1 6.822 5.599 0.86 0.82 GATA-3
M00286 0.84 718 731 324 337 1 6.393 6.393 0.80 0.80 GKLF
M00286 0.84 719 732 325 338 1 6.858 7.258 0.81 0.82 GKLF
M00286 0.86 721 734 327 340 1 6.693 7.258 0.81 0.82 GKLF
M00286 0.89 722 735 328 341 1 6.393 6.393 0.80 0.80 GKLF
M00286 0.89 725 738 331 344 1 6.346 7.258 0.80 0.82 GKLF
M00286 0.91 726 739 332 345 1 6.393 6.393 0.80 0.80 GKLF
M00077 0.90 726 734 332 340 1 5.599 5.599 0.82 0.82 GATA-3
M00286 0.93 727 740 333 346 1 7.258 7.258 0.82 0.82 GKLF
M00286 0.93 728 741 334 347 1 6.393 6.393 0.80 0.80 GKLF
M00077 0.92 728 736 334 342 1 5.599 5.599 0.82 0.82 GATA-3
M00286 0.93 729 742 335 348 1 7.258 7.258 0.82 0.82 GKLF
M00286 0.95 730 743 336 349 1 6.393 6.393 0.80 0.80 GKLF
M00077 0.95 730 738 336 344 1 5.599 5.599 0.82 0.82 GATA-3
M00286 0.95 731 744 337 350 1 7.258 7.258 0.82 0.82 GKLF
M00077 0.95 732 740 338 346 1 5.599 5.599 0.82 0.82 GATA-3
M00286 0.93 732 745 338 351 1 10.063 6.393 0.89 0.80 GKLF
M00077 0.95 734 742 340 348 1 5.599 5.599 0.82 0.82 GATA-3
M00077 0.95 736 744 342 350 1 5.599 5.599 0.82 0.82 GATA-3
M00077 0.95 750 758 352 360 1 5.599 5.599 0.82 0.82 GATA-3
M00286 0.93 750 763 352 365 1 6.906 6.393 0.81 0.80 GKLF
M00286 0.93 751 764 353 366 1 8.372 7.258 0.85 0.82 GKLF
M00286 0.93 752 765 354 367 1 6.393 6.393 0.80 0.80 GKLF
M00286 0.93 753 766 355 368 1 7.258 7.258 0.82 0.82 GKLF
M00286 0.93 754 767 356 369 1 6.793 6.393 0.81 0.80 GKLF
M00286 0.93 755 768 357 370 1 8.038 7.258 0.84 0.82 GKLF
M00286 0.93 756 769 358 371 1 6.958 6.393 0.82 0.80 GKLF
M00286 0.93 757 770 359 372 1 7.258 7.258 0.82 0.82 GKLF
M00286 0.93 758 771 360 373 1 8.206 6.393 0.85 0.80 GKLF
M00286 0.93 759 772 361 374 1 8.727 7.258 0.86 0.82 GKLF
M00286 0.93 760 773 362 375 1 10.975 10.063 0.91 0.89 GKLF
M00286 0.95 761 774 363 376 1 11.376 7.706 0.92 0.83 GKLF
M00077 0.95 762 770 364 372 1 5.599 5.599 0.82 0.82 GATA-3
M00286 0.93 763 776 365 378 1 6.746 6.275 0.81 0.80 GKLF
M00077 0.95 764 772 366 374 1 5.599 5.599 0.82 0.82 GATA-3
M00706* 0.95 765 773 367 375 1 8.571 8.571 0.89 0.89 Pro only
M00286 0.89 765 778 367 380 1 7.258 8.372 0.82 0.85 GKLF
M00077 0.95 766 774 368 376 1 6.822 5.739 0.86 0.82 GATA-3
M00286 0.86 766 779 368 381 1 6.393 6.393 0.80 0.80 GKLF
M00286 0.84 767 780 369 382 1 6.858 6.858 0.81 0.81 GKLF
M00658* 0.92 769 776 371 378 1 7.706 11.703 0.87 1.00 Pro only
M00286 0.82 769 782 371 384 1 6.693 7.472 0.81 0.83 GKLF
M00286 0.80 770 783 372 385 1 6.393 6.958 0.80 0.82 GKLF
M00286 0.75 773 786 375 388 1 6.346 7.815 0.80 0.84 GKLF
M00286 0.75 774 787 376 389 1 6.393 7.305 0.80 0.82 GKLF
M00286 0.75 775 788 377 390 1 7.258 7.258 0.82 0.82 GKLF
M00286 0.77 776 789 378 391 1 6.393 6.393 0.80 0.80 GKLF
M00077 0.77 776 784 378 386 1 5.599 5.599 0.82 0.82 GATA-3
M00286 0.77 777 790 379 392 1 7.258 7.258 0.82 0.82 GKLF
M00077 0.74 778 786 380 388 1 5.599 5.599 0.82 0.82 GATA-3
M00077 0.74 780 788 382 390 1 5.599 5.599 0.82 0.82 GATA-3
M00077 0.74 782 790 384 392 1 5.599 5.599 0.82 0.82 GATA-3
M00486* 0.56 791 799 439 447 2 5.363 6.049 0.86 0.89 Pro only
M00498* 0.53 816 823 467 474 2 3.804 3.804 0.81 0.81 Pro only
M00160 0.60 833 844 492 503 1 6.942 7.119 0.81 0.81 SRY
M00162 0.57 833 846 492 505 2 6.237 6.757 0.80 0.82 Oct-1
M00148 0.65 835 841 494 500 1 5.846 7.103 0.87 0.92 SRY
M00486* 0.62 836 844 495 503 1 6.304 6.695 0.90 0.92 Pro only
M00805* 0.64 837 842 496 501 1 9.771 8.171 1.00 0.93 Pro only
M00148 0.59 839 845 498 504 1 4.848 6.998 0.83 0.92 SRY
M00624* 0.54 842 848 501 507 2 7.238 5.004 0.92 0.83 Pro only
M00462* 0.55 845 854 504 513 2 5.842 7.092 0.86 0.91 Pro only
M00076 0.55 845 854 504 513 2 7.293 5.804 0.92 0.86 GATA-2
M00789* 0.54 846 852 505 511 2 5.923 5.780 0.85 0.85 Pro only
M00462* 0.55 876 885 527 536 1 5.750 7.987 0.85 0.94 Pro only
M00076 0.55 876 885 527 536 1 4.455 5.917 0.81 0.87 GATA-2
M00462* 0.55 879 888 530 539 2 7.194 6.944 0.91 0.90 Pro only
M00789* 0.57 880 886 531 537 2 7.842 5.190 0.92 0.83 Pro only
M00777* 0.58 884 896 535 547 2 7.125 6.977 0.82 0.81 Pro only
M00805* 0.56 884 889 535 540 1 5.774 7.031 0.83 0.88 Pro only
M00500* 0.58 887 894 538 545 2 6.011 6.746 0.88 0.90 Pro only
M00498* 0.58 887 894 538 545 2 6.097 6.097 0.90 0.90 Pro only
M00499* 0.58 887 894 538 545 2 7.681 6.563 0.97 0.93 Pro only
M00493* 0.58 887 894 538 545 2 5.814 7.366 0.87 0.94 Pro only
M00496* 0.58 887 894 538 545 2 6.731 5.901 0.92 0.88 Pro only
M00494* 0.58 887 894 538 545 2 4.578 7.613 0.81 0.94 Pro only
M00497* 0.58 887 894 538 545 2 4.451 4.813 0.83 0.85 Pro only
M00750* 0.62 889 895 540 546 1 5.109 6.134 0.82 0.86 Pro only
M00462* 0.68 914 923 565 574 1 5.708 7.478 0.85 0.92 Pro only
M00789* 0.65 916 922 567 573 1 6.296 5.790 0.87 0.85 Pro only
M00252 0.62 925 939 576 590 1 8.987 5.962 0.87 0.81 TATA
M00471* 0.68 926 933 577 584 1 8.921 8.921 0.90 0.90 Pro only
M00499* 0.68 926 933 577 584 2 3.849 3.849 0.81 0.81 Pro only
M00496* 0.68 926 933 577 584 2 4.472 4.472 0.82 0.82 Pro only
M00130 0.62 926 937 577 588 2 7.449 6.884 0.82 0.81 FOXD3
M00422 0.56 926 943 577 594 1 14.475 11.590 0.92 0.87 FOXJ2
M00750* 0.68 927 933 578 584 1 5.489 5.489 0.83 0.83 Pro only
M00486* 0.64 927 935 578 586 1 3.982 3.982 0.80 0.80 Pro only
M00293 0.57 927 942 578 593 1 13.106 12.845 0.90 0.90 Freac-7
M00724* 0.63 928 938 579 589 2 12.517 12.033 0.97 0.96 Pro only
M00791* 0.60 928 940 579 591 1 11.401 9.844 0.93 0.89 Pro only
M00148 0.68 929 935 580 586 1 4.412 4.412 0.81 0.81 SRY
M00489* 0.62 929 940 580 591 1 5.914 9.691 0.81 0.95 Pro only
M00809* 0.60 929 941 580 592 2 14.849 11.302 0.96 0.88 Pro only
M00294 0.60 929 941 580 592 2 13.246 10.357 0.93 0.87 HFH-8
M00289 0.60 929 941 580 592 2 14.479 14.197 0.96 0.95 HFH-3
M00131 0.58 929 943 580 594 2 9.770 11.041 0.85 0.87 HNF-3beta
M00747* 0.68 930 936 581 587 2 5.657 5.657 0.81 0.81 Pro only
M00789* 0.68 930 936 581 587 1 4.464 4.464 0.80 0.80 Pro only
M00148 0.68 930 936 581 587 1 5.137 5.137 0.84 0.84 SRY
M00129 0.62 930 941 581 592 2 13.413 9.416 0.92 0.82 HFH-1
M00130 0.62 930 941 581 592 2 14.004 11.421 0.97 0.91 FOXD3
M00471* 0.66 931 938 582 589 1 6.331 9.292 0.81 0.91 Pro only
M00498* 0.66 931 938 582 589 2 3.965 5.394 0.82 0.87 Pro only
M00486* 0.64 931 939 582 590 1 7.090 5.368 0.93 0.86 Pro only
M00473* 0.62 931 940 582 591 1 12.876 7.442 1.00 0.86 Pro only
M00472* 0.59 932 942 583 593 1 12.384 8.173 0.98 0.86 Pro only
M00742* 0.56 933 945 584 596 2 12.906 8.129 0.88 0.80 Pro only
M00486* 0.54 935 943 586 594 1 7.205 4.035 0.94 0.80 Pro only
M00148 0.57 938 944 589 595 1 6.186 4.173 0.88 0.80 SRY
M00632* 0.50 954 965 604 615 1 9.253 9.534 0.86 0.87 Pro only
M00471* 0.50 957 964 607 614 1 6.968 6.258 0.83 0.81 Pro only
M00750* 0.51 962 968 612 618 1 6.442 5.788 0.87 0.84 Pro only
M00646* 0.50 974 981 847 854 1 9.492 6.254 0.96 0.83 Pro only
M00805* 0.58 1451 1456 1009 1014 2 5.774 5.774 0.83 0.83 Pro only
M00801* 0.61 1453 1458 1011 1016 2 5.568 6.599 0.85 0.89 Pro only
M00099 0.65 1454 1469 1012 1027 1 9.294 6.141 0.89 0.82 S8
M00640* 0.71 1459 1466 1017 1024 2 7.001 5.201 0.88 0.81 Pro only