Results for the job "txtswn Tue Jun 22 18:04:14 2004":

Parameters:
  PWM threshold: 80 %
  Homology threshold: 50 %
  Flank length: 15 bp


Plain files:
  Raw TFBSs data
  List of CONREAL aligned TFBSs
  CONREAL alignment

Graphical representation of aligned TFBSs.

Bars represent number of aligned hits found within 20 bp window calculated in coordinates of the longer sequence.
Each black line represents an aligned TFBS.

CONREAL:



CONREAL alignment:

Aligned TFBSs are shown in uppercase.
No attempts were made to align regions not covered by TFBSs (lowercase).

                  10        20        30        40        50        60
Human_HPS2agagctactctggggccaggcaagcatcccgcctaggctccctagtgcatattagtgagt
                 |        |     |  |    |    |  |     | |       |  |  
Mouse_HPS2gattgctcctctctctcctagcactaaggaggagcgtgttttccgagagacaacgcaatc
                  10        20        30        40        50        60

                  70        80                                   90   
Human_HPS2aacacgactggcgcgcgaggtggtccatt---------------------------TTAT
               | |  |      |                                      |   
Mouse_HPS2tttcagtcaagtcgagaaatcttggtgggaccttggtgtttgcctggtgctaccctTGGG
                  70        80        90       100       110       120

              100       110                                           
Human_HPS2TTTTGGTagctagacgccaa----------------------------------------
          |||||||   | |  ||                                           
Mouse_HPS2TTTTGGTgatttgctgcagggctgcaggtattcagtcctttctggaccgcatgtgtaggg
                 130       140       150       160       170       180

                                                                      
Human_HPS2------------------------------------------------------------
                                                                      
Mouse_HPS2aaagaggaacgaaggaacggtagtcaccagggaggctggtgagggtcctcttggaaagct
                 190       200       210       220       230       240

                                                                      
Human_HPS2------------------------------------------------------------
                                                                      
Mouse_HPS2gcccgggacagaagggttgcagttctgcagccagaaaccatcccatcttgctgcttaggt
                 250       260       270       280       290       300

                                                                      
Human_HPS2------------------------------------------------------------
                                                                      
Mouse_HPS2gttgttggaaagccacttgcccaagagtggaagcaggcggcgctcggaggagagcgcact
                 310       320       330       340       350       360

                                                         120       130
Human_HPS2-------------------------------------------TAGGACGCACCacttca
                                                      ||||||||   ||  |
Mouse_HPS2ccagcttctggcccaggcttagctcgcggcagctgactgcgggCAGGACGCAAGcctcga
                 370       380       390       400       410       420

                 140       150       160       170       180       190
Human_HPS2gctccaaacGGGAACTGGTGGCcccaagatgttttcttttctttttcatttttttgagac
           || |||    ||||    |||||||                                  
Mouse_HPS2acttcaagtAAGAACCTCGGGCcccag---------------------------------
                 430       440                                        

                 200       210       220       230       240       250
Human_HPS2agggtctcgctctgtcgcccaggctggaatgcagtggagagatctcaactcatcgctacc
                                                                      
Mouse_HPS2------------------------------------------------------------
                                                                      

                 260       270       280       290       300       310
Human_HPS2ccctccttctgggttcgagtgatcctcccacctcagcctcagtagctgggaccacagaca
                                                                      
Mouse_HPS2------------------------------------------------------------
                                                                      

                 320       330       340       350       360       370
Human_HPS2cgcgccaccacgccggctaatttttatattttttgcagagaaagggtctcgctatgttgc
                                                                      
Mouse_HPS2------------------------------------------------------------
                                                                      

                 380       390       400       410       420       430
Human_HPS2ctaggctggtctcgaactcctggcctcaagtgatccacccgcctcggcctcccaaagtgc
                                                                      
Mouse_HPS2------------------------------------------------------------
                                                                      

                 440       450       460       470       480       490
Human_HPS2tggaattactggcgtgagccaccgcgcccggtctgcccccaagactttcattgaaaagat
                                                                      
Mouse_HPS2------------------------------------------------------------
                                                                      

                 500       510       520       530       540       550
Human_HPS2ggaatggtcgcttctgtgcggatcctccaaaccatcgttgggagaggcctccttaaagtc
                                                                      
Mouse_HPS2------------------------------------------------------------
                                                                      

                 560       570       580       590       600       610
Human_HPS2taggagaaaagttgtttgggaccgatATGAAAGTAAGGCAAAGCCggatggaagagagta
                                       ||| | |||||||||  |  ||  ||   | 
Mouse_HPS2--------------------------GAAAAACTTAGGCAAAGCTtgcaggcggatgatc
                                    450       460       470       480 

                 620       630       640       650       660       670
Human_HPS2gccgaaacaagcaagaaaaggaaaagcgatcgtgatgggtttaggaaaggtgatctggcg
          |||    |    |     |       |      |  ||   |   |    |     | | 
Mouse_HPS2gcctccgcgcagatcctgaaagcctcctccgaaggaggagctttcacgtctagaacgtca
                490       500       510       520       530       540 

                 680                                                  
Human_HPS2tgctaaatgg--------------------------------------------------
           || |    |                                                  
Mouse_HPS2ggccactctggctgtgagaggggcggaagccagcctcgagggctgagagcttgtggccgc
                550       560       570       580       590       600 

                                               690       700       710
Human_HPS2------------------------------CATTTCCGGAGAAATCTGAaaactattgct
                                        | |||| ||||  ||| |  | | ||   |
Mouse_HPS2tgaagccaagttcttccgacctgtgcaccgCGTTTCAGGAGCCATCGGGgagcgatcagt
                610       620       630       640       650       660 

                    720       730       740       750       760       
Human_HPS2ttactg---AAGTATAGCAAAGagctgtccgggctctggaaactccttaacggatcaaaa
            || |   |||   ||||| || |  |   || ||||  | |||||  ||  |      
Mouse_HPS2ggacagcagAAGAGAAGCAACGaaccctggaggatctgagatctcctccaccaaaacg--
                670       680       690       700       710           

          770       780       790       800       810       820       
Human_HPS2cggatgcaatgggtatccttctccaaagacacaCCTCAAACGGGCcgggagccgggcagt
                                           | || || || |    | || |    |
Mouse_HPS2---------------------------------CATCCAAGGGCCtcatatccagttctt
                                         720       730       740      

          830       840       850       860       870                 
Human_HPS2tagccacccgctgcctccccttccgcagtccggctcgcagccgctcagcta---------
          ||    ||| |  |   ||      |     |     |  | |||               
Mouse_HPS2tacgtgcccacgactctccggctgacccggtgcaaaaccccagcttcctgttaagggtcc
           750       760       770       780       790       800      

                             880       890       900       910       9
Human_HPS2--------------------CCTCTAAAGCCCGgaGCAGGAAAgtccgcgcaggcctgga
                              || ||||  ||||||||  || | ||        |  |  
Mouse_HPS2cgagtgtagcttcccggcagCCCCTAACACCCGgaGCGCGACAatctagcgcaccgggag
           810       820       830       840       850       860      

          20       930       940       950       960       970       9
Human_HPS2tggcccgggtggtaatctagcaggcctgCACACTGCGCATGCGCAGGGGGTGGACTGCca
           |||  | | ||      |         |||| |||||| ||||||||||||| | ||| 
Mouse_HPS2cggcaggcgcgggcccgcacgga-----CACAGTGCGCACGCGCAGGGGGTGGGCCGCcc
           870       880            890       900       910       920 

          80       990      1000      1010      1020      1030      10
Human_HPS2ggtcggctcagggagccgtgacgagtccggaagcgcctgcgcgcgctcctccgtacgaga
          |||| ||    | ||    ||        |   || |      | |  |  |    ||  
Mouse_HPS2ggtcagccggagcagtgacgagcccggaagcgccggcgcgcgccccctccgccccagaac
                930       940       950       960       970       980 

          40      1050      1060      1070      1080      1090      11
Human_HPS2actagttttgttccgtgccctctggactggaaccttttggagagaacccCCGGCAGGacc
               |  |     || | |      |  |       | |||       || ||| |  |
Mouse_HPS2tagtttggttcggtgtcctccgaacgccagccatccgtagaggac----CCCGCACGctc
                990      1000      1010      1020          1030      1

          00      1110      1120      
Human_HPS2aacCCCGCACCcgccagcaccgcggca-
             |||||||||||| ||    | ||| 
Mouse_HPS2tctCCCGCACCcgcctgctggccagcac
          040      1050      1060

CONREAL aligned hits:

Matrix Identity Seq1 from Seq1 to Seq2 from Seq2 to Strand Score1 Score2 Rel.Score1 Rel.Score2 Factor
M00148 0.57 90 96 117 123 2 4.412 4.201 0.81 0.80 SRY
M00734* 0.54 90 98 117 125 2 6.899 5.524 0.84 0.80 Pro only
M00734* 0.51 91 99 118 126 2 6.228 6.173 0.82 0.82 Pro only
M00731* 0.50 93 100 120 127 2 7.779 6.937 0.86 0.83 Pro only
M00624* 0.51 94 100 121 127 2 4.485 4.485 0.81 0.81 Pro only
M00751* 0.50 95 100 122 127 1 6.346 6.346 0.83 0.83 Pro only
M00271 0.50 95 100 122 127 1 5.905 5.905 0.84 0.84 AML-1a
M00332* 0.56 114 124 404 414 1 6.748 7.537 0.81 0.83 Pro only
M00801* 0.56 115 120 405 410 2 4.944 4.944 0.83 0.83 Pro only
M00500* 0.55 140 147 430 437 2 5.758 4.092 0.87 0.81 Pro only
M00499* 0.55 140 147 430 437 2 6.388 5.243 0.92 0.87 Pro only
M00497* 0.55 140 147 430 437 2 7.497 4.112 0.97 0.82 Pro only
M00469* 0.51 144 152 434 442 2 5.556 8.243 0.84 0.93 Pro only
M00486* 0.56 577 585 448 456 1 6.333 5.332 0.90 0.86 Pro only
M00148 0.62 580 586 451 457 1 6.998 6.579 0.92 0.90 SRY
M00770* 0.60 581 592 452 463 1 7.983 9.758 0.90 0.96 Pro only
M00109 0.59 581 594 452 465 1 6.638 8.217 0.82 0.86 C/EBPbeta
M00621* 0.57 582 593 453 464 2 8.406 7.459 0.86 0.84 Pro only
M00761* 0.55 586 595 457 466 1 6.578 5.984 0.84 0.83 Pro only
M00496* 0.58 587 594 458 465 2 4.110 4.110 0.81 0.81 Pro only
M00486* 0.56 587 595 458 466 1 6.040 4.534 0.89 0.82 Pro only
M00750* 0.57 588 594 459 465 1 5.610 5.610 0.84 0.84 Pro only
M00805* 0.56 588 593 459 464 1 6.098 6.098 0.84 0.84 Pro only
M00498* 0.50 681 688 632 639 1 7.526 5.233 0.95 0.87 Pro only
M00496* 0.50 681 688 632 639 1 8.504 4.971 1.00 0.84 Pro only
M00494* 0.50 681 688 632 639 1 7.604 4.980 0.94 0.82 Pro only
M00147 0.53 688 697 639 648 1 5.866 6.533 0.82 0.84 HSF2
M00076 0.55 690 699 641 650 2 5.081 7.333 0.83 0.92 GATA-2
M00770* 0.52 717 728 671 682 1 7.526 6.462 0.88 0.85 Pro only
M00621* 0.52 718 729 672 683 2 6.499 6.121 0.81 0.80 Pro only
M00624* 0.54 723 729 677 683 1 5.977 4.229 0.87 0.80 Pro only
M00745* 0.53 801 810 720 729 1 6.997 8.973 0.83 0.89 Pro only
M00707* 0.52 801 812 720 731 1 6.403 7.712 0.81 0.85 Pro only
M00671* 0.53 802 809 721 728 2 6.356 7.053 0.82 0.85 Pro only
M00805* 0.56 803 808 722 727 1 7.632 5.774 0.91 0.83 Pro only
M00623* 0.63 879 891 827 839 1 6.465 6.679 0.80 0.81 Pro only
M00050 0.55 894 901 842 849 2 6.795 8.718 0.81 0.87 E2F
M00738* 0.55 894 901 842 849 2 6.207 8.752 0.80 0.87 Pro only
M00739* 0.55 894 901 842 849 2 7.833 7.842 0.87 0.87 Pro only
M00737* 0.55 894 901 842 849 2 8.184 7.578 0.87 0.85 Pro only
M00426* 0.55 894 901 842 849 2 5.711 7.541 0.81 0.86 Pro only
M00736* 0.55 894 901 842 849 2 7.510 7.369 0.86 0.86 Pro only
M00427* 0.55 894 901 842 849 2 5.755 7.499 0.81 0.86 Pro only
M00431* 0.55 894 901 842 849 2 5.739 9.171 0.83 0.94 Pro only
M00428* 0.55 894 901 842 849 2 4.681 8.449 0.84 0.98 Pro only
M00468* 0.59 947 953 890 896 2 7.069 4.643 0.93 0.80 Pro only
M00652* 0.70 952 961 895 904 2 15.042 14.233 1.00 0.98 Pro only
M00322* 0.70 952 961 895 904 2 7.659 6.184 0.86 0.81 Pro only
M00652* 0.72 954 963 897 906 1 15.042 11.508 1.00 0.90 Pro only
M00322* 0.72 954 963 897 906 1 7.659 8.241 0.86 0.87 Pro only
M00726* 0.75 956 961 899 904 1 6.502 7.666 0.91 0.98 Pro only
M00721* 0.74 956 971 899 914 1 13.128 12.448 0.88 0.87 Pro only
M00652* 0.80 958 967 901 910 2 8.892 8.544 0.82 0.81 Pro only
M00001 0.79 959 970 902 913 1 8.356 8.356 0.85 0.85 MyoD
M00277 0.79 959 970 902 913 1 7.426 7.426 0.83 0.83 Lmo2 complex
M00716* 0.79 959 966 902 909 1 5.219 5.219 0.80 0.80 Pro only
M00695* 0.78 959 965 902 908 1 5.230 5.230 0.82 0.82 Pro only
M00693* 0.80 960 970 903 913 1 7.146 7.146 0.81 0.81 Pro only
M00807* 0.80 961 971 904 914 1 6.432 6.432 0.80 0.80 Pro only
M00033 0.75 961 974 904 917 1 6.468 8.484 0.80 0.87 p300
M00726* 0.86 962 967 905 910 1 6.502 6.502 0.91 0.91 Pro only
M00468* 0.84 962 968 905 911 1 4.970 4.970 0.82 0.82 Pro only
M00807* 0.80 962 972 905 915 1 6.571 7.019 0.81 0.82 Pro only
M00706* 0.82 963 971 906 914 1 6.736 6.736 0.82 0.82 Pro only
M00196 0.77 963 975 906 918 1 8.776 11.378 0.82 0.88 Sp1
M00749* 0.84 964 970 907 913 2 6.983 6.983 0.85 0.85 Pro only
M00716* 0.82 964 971 907 914 1 5.378 5.378 0.81 0.81 Pro only
M00720* 0.79 964 972 907 915 1 8.619 11.716 0.88 0.99 Pro only
M00695* 0.81 965 971 908 914 1 6.198 6.198 0.86 0.86 Pro only
M00450* 0.77 965 973 908 916 1 7.427 7.427 0.85 0.85 Pro only
M00448* 0.77 965 973 908 916 1 7.542 8.722 0.86 0.91 Pro only
M00449* 0.77 965 973 908 916 1 7.775 8.658 0.86 0.89 Pro only
M00378 0.74 965 976 908 919 2 7.357 7.770 0.87 0.88 Pax-4
M00428* 0.55 1088 1095 1027 1034 2 4.899 5.050 0.84 0.85 Pro only
M00649* 0.66 1102 1109 1041 1048 2 7.888 7.888 0.85 0.85 Pro only
M00428* 0.66 1102 1109 1041 1048 2 4.721 4.721 0.84 0.84 Pro only
M00695* 0.65 1103 1109 1042 1048 2 6.740 6.740 0.88 0.88 Pro only
M00803* 0.64 1104 1109 1043 1048 2 4.917 4.917 0.81 0.81 Pro only