CONREAL

CONREAL ALIGNMENT

                  10        20        30        40                                       50        60        7
seq1      acagcatatccatttgatggaattcattcgaccactgaaagcatagt-------------------------------GAGTGAACGATCTcaacggtgg
           |  |   ||      |         |  |     | |      |                                 ||| ||||  |           
seq2      cccacccctcgcacccaccccccaactgagctgtgttaggcgggacagaggccacggggacagtttgctagggacaatGAGAGAACTGTGA---------
                  10        20        30        40        50        60        70        80        90          

          0        80        90       100       110       120       130       140       150       160       17
seq1      gctgagcaaagagaTGCGTGTGGCagggctatgtgctgtagatggggagttggaagaatttgccctaaggtgggctggaaggggtgggtagtgggttggg
                          || |||| |    |  |||| |  ||                                                          
seq2      --------------CCCGGGTGGTaaaagtgggtgcagggga----------------------------------------------------------
                              100       110                                                                   

          0       180       190       200       210       220       230       240       250       260       27
seq1      gggagtgatgctctctttgatctgcaggtggtggaagtatTGATTCTTagcctctgCCTTTCCCCCAagagatgctcaatctactatatccccagccagt
                                                  |  |||| ||  ||  ||||  |  |||    | |||  | ||    |            
seq2      ----------------------------------------TTTTTCTCagaatcgcCCTTCTCTTCAaagtttcctccttttagagcaaaa---------
                                                120       130       140       150       160       170         

          0       280       290       300       310       320       330       340       350       360       37
seq1      tcttgcaacccataccttgctgggctgggctcaaagctcccaggtggcacccaggcactgaggggtggactgttcggggatttaggcccttccagagcgc
                                                                                                              
seq2      ----------------------------------------------------------------------------------------------------
                                                                                                              

          0       380       390       400       410       420       430       440       450       460       47
seq1      cccctccacttccaggcacccccaatacacatacgattttttaaaataAATATTGcaaacataggttcaacacaaaactcctaatgtgcactccactccc
                                                           |||  |                                             
seq2      ------------------------------------------------TATAAAGa--------------------------------------------
                                                                                                              

          0       480       490       500       510       520       530       540       550       560       57
seq1      aaaatagattgagaactcctataaattccagcgttggcactctgggggcaactgagcccttctgtgcgctatgtcacctCCCCAAAGGTcagggagagca
                                                                                            ||||| ||||  |  |  
seq2      -------------------------------------------------------------------------------GAACAAAGATcagaaaatgag
                                                                                        180       190       20

          0       580       590                                                                               
seq1      gtcacaaaaggacagctctagcc--------------------------------------------------------------------------CCA
          || |        |                                                                                     ||
seq2      gttagccgcaaccgtaaaaccagatacccaccgaaaagtatgcgggtgcttaccggaagttaccatcaaggcaagcccgagaatggtgcagccaggcTCA
          0       210       220       230       240       250       260       270       280       290       30

            600       610       620       630       640       650       660       670       680       690     
seq1      GAACTTCAGTTCAttaggcaaagcctgaggttccggggcatggggaggagagaagggatcagctgaggagccaggaaacctgggttctgagcctggttcg
          ||  |||| | | ||    |   || |           | |                                                           
seq2      GAGTTTCATTGCTttcaaaatccccaggatcaaaccttcctc----------------------------------------------------------
          0       310       320       330       340                                                           

            700       710       720       730       740       750       760                                   
seq1      gaccctcagcaagttatttcttctctCTGCGCCTCCGTTTCCTCTtctgtaaaatggggcatgggcaa--------------------------------
                                    || |||||  | ||| ||||   |   ||       ||   |                                
seq2      --------------------------CTCCGCCTTAGATTCTTCTtgcctgttatcaaaatgggaggattccagaggcagcttatttctcttgttatttg
                                          350       360       370       380       390       400       410     

                                                                                     770       780       790  
seq1      -----------------------------------------------------------------------GGCCTGGCAGgggcgggGCTCGAACccgc
                                                                                 | |||||| ||   |   | || | ||  
seq2      aagccgggaaataagaataacacctacccaccgttcttgtccttaagatgagcctactgggctgaggttgcGACCTGGCTGgtaggaaCCCCGTAAcccg
            420       430       440       450       460       470       480       490       500       510     

               800       810       820       830       840       850       860       870       880       890  
seq1      ggaaggcgacggcggctccggcccctcccggggcgggcggtcacgtgcgcgatcacgcggtcctacccggaagcgcgcccgggctcctgcaggcggggcg
          | | |  |  |      |   |   |||| || |   |             ||| |   ||   |   |       |   |  |  |   |  |    | 
seq2      gtaggaaggtgcaacagcgctctgttccctggcctcccaagaggagtttgaatctctgagttgaatgggaccttaggaaagcccaaccagaaccaaaccc
            520       530       540       550       560       570       580       590       600       610     

               900       910       920       930       940       950       960       970       980            
seq1      ctgtgcgcgccgcgatccggtacgtgggcctccgggctgtcccctctgggggcggcgatcctccctccggagccccccttcaaccctcccggaagt----
             |||        |   ||  |    |||  |  ||  |    | ||  |    | ||||   |||      |||        |     |   |     
seq2      gaatgcagcttttcactgggacctcctgccagcttgcgatgggttgtgtagtaacccatccctgctcaccgctccctggggctgctcagggtgggattgc
            620       630       640       650       660       670       680       690       700       710     

                                                                                                              
seq1      ----------------------------------------------------------------------------------------------------
                                                                                                              
seq2      tgaccccacctgtgtgtgaatgagtgacccaaatataaactgtccagttgcagaggaggtaggagctaatgtgtcatcaacgcttgctccacataaagga
            720       730       740       750       760       770       780       790       800       810     

                                                                                                              
seq1      ----------------------------------------------------------------------------------------------------
                                                                                                              
seq2      caccttctagcttgtggtccttaaaatgggggaacctgtgacttctcagcccgtgtccaggttgtccactctcaggaacaggcggcagtggaaaccagac
            820       830       840       850       860       870       880       890       900       910     

                                                 990      1000      1010         1020      1030      1040     
seq1      ----------------------------------------GAGGACCAGGGATGCTGTGCTGCTctcc---CATGAGccAGTCACCgagtcggtctgctg
                                                   ||| ||| ||||||||||||||| |       ||| |  ||||  |  ||   || || 
seq2      cctctgaatgccttcatgccttttctgccttaagcatttgCAGGCCCAAGGATGCTGTGCTGCTgttgtctGCTGACctGGTCAGAgtatctagctcctc
            920       930       940       950       960       970       980       990      1000      1010     

           1050      1060      1070      1080      1090       
seq1      cagccctttctgaacctctggccgtctggatgctccactgtgcttgccaag-
               |  |        ||   |    |       ||| |   |  ||    
seq2      agaagccctgctgtgtgctttgccaaggctgaactcacggatgtgacctttg
           1020      1030      1040      1050      1060       

CONREAL ALIGNED HITS

Matrix
Identity
Seq1 from
Seq1 to
Seq2 from
Seq2 to
Strand
Score1
Score2
Rel.Score1
Rel.Score2
Factor
Found by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M00747*
51.35
48
54
79
85
2
6.834
5.565
0.85
0.80
Pro only
C only
MA0080
52.78
50
55
81
86
1
4.376
4.644
0.82
0.83
SPI-1
C only
M00183
50.00
50
59
81
90
1
5.890
5.769
0.82
0.82
c-Myb 
C only
M00913*
53.85
52
60
83
91
1
5.556
6.417
0.84
0.87
Pro only
C only
M00322*
50.00
84
93
92
101
2
8.046
5.988
0.87
0.80
Pro only
C only
M00253
52.63
85
92
93
100
2
4.194
3.749
0.87
0.85
cap 
C only
MA0006
52.78
86
91
94
99
1
5.752
4.891
0.84
0.80
Ahr-ARNT
C only
M00751*
55.56
88
93
96
101
1
6.502
6.346
0.84
0.83
Pro only
C only
M00271
55.56
88
93
96
101
1
6.779
6.101
0.88
0.85
AML-1a 
C only
M00500*
57.89
210
217
120
127
1
4.080
5.383
0.81
0.86
Pro only
C L M
M00498*
57.89
210
217
120
127
1
5.533
5.233
0.88
0.87
Pro only
C L M
M00499*
57.89
210
217
120
127
1
4.898
6.782
0.85
0.93
Pro only
C L M
M00493*
57.89
210
217
120
127
1
6.057
6.131
0.88
0.88
Pro only
C L M
M00494*
57.89
210
217
120
127
1
5.247
5.439
0.84
0.84
Pro only
C L M
M00497*
57.89
210
217
120
127
1
4.893
4.146
0.85
0.82
Pro only
C L M
MA0039
52.50
226
235
136
145
2
6.554
7.840
0.85
0.89
Gklf
C L M
MA0080
55.56
227
232
137
142
2
5.116
5.496
0.85
0.87
SPI-1
C L M
MA0039
55.00
227
236
137
146
2
8.040
6.547
0.89
0.85
Gklf
C L M
M00101
51.35
418
424
171
177
1
3.238
3.440
0.83
0.84
CdxA 
C only
M01022*
50.00
549
558
179
188
1
6.134
8.714
0.80
0.88
Pro only
C only
M00486*
51.28
550
558
180
188
1
4.392
5.540
0.82
0.87
Pro only
C only
M00805*
50.00
551
556
181
186
1
6.066
8.180
0.84
0.94
Pro only
C only
M00253
50.00
593
600
297
304
1
4.190
5.344
0.87
0.92
cap 
C only
M00314*
50.00
599
606
303
310
1
6.669
4.927
0.91
0.83
Pro only
C only
M00313*
50.00
599
606
303
310
1
7.075
5.049
0.94
0.84
Pro only
C only
M00315*
50.00
599
606
303
310
1
6.968
4.654
0.93
0.82
Pro only
C only
M00747*
51.35
600
606
304
310
1
10.025
5.657
0.97
0.81
Pro only
C only
M00253
52.63
601
608
305
312
1
5.500
5.342
0.92
0.92
cap 
C only
MA0057
55.00
722
731
342
351
2
6.639
6.716
0.83
0.83
MZF_5-13
C only
M00803*
58.33
723
728
343
348
2
6.310
5.658
0.88
0.85
Pro only
C only
M00695*
59.46
724
730
344
350
2
5.555
5.779
0.83
0.84
Pro only
C only
M00500*
55.26
731
738
351
358
1
7.687
4.708
0.94
0.83
Pro only
C only
M00499*
55.26
731
738
351
358
1
6.027
5.243
0.90
0.87
Pro only
C only
M00493*
55.26
731
738
351
358
1
6.909
5.579
0.92
0.86
Pro only
C only
M00494*
55.26
731
738
351
358
1
6.526
4.444
0.89
0.80
Pro only
C only
M00497*
55.26
731
738
351
358
1
5.983
4.506
0.90
0.84
Pro only
C only
M00658*
50.00
733
740
353
360
2
9.205
6.016
0.92
0.81
Pro only
C only
MA0092
50.00
764
773
487
496
1
8.157
7.018
0.86
0.83
Thing1-E47
C only
M00431*
52.63
781
788
504
511
2
5.024
4.985
0.81
0.81
Pro only
C only
M00428*
52.63
781
788
504
511
2
4.677
4.491
0.84
0.83
Pro only
C only
M00967*
53.85
989
997
956
964
1
5.970
5.592
0.83
0.81
Pro only
C only
M00076
60.00
996
1005
963
972
1
5.759
5.522
0.86
0.85
GATA-2 
C L M
M00075
60.00
996
1005
963
972
1
5.517
4.749
0.85
0.82
GATA-1 
C L M
M00253
57.89
996
1003
963
970
2
5.230
5.454
0.91
0.92
cap 
C L M
MA0098
61.11
997
1002
964
969
2
5.373
7.229
0.89
0.97
c-ETS
C L M
MA0036
62.86
998
1002
965
969
1
5.978
5.978
0.96
0.96
GATA-2
C L M
M00624*
62.16
998
1004
965
971
2
6.759
6.759
0.90
0.90
Pro only
C L M
MA0035
61.11
998
1003
965
970
1
6.686
6.686
0.98
0.98
GATA-1
C L M
M00253
63.16
999
1006
966
973
2
4.659
4.659
0.89
0.89
cap 
C L M
M00253
63.16
1001
1008
968
975
2
2.723
2.723
0.81
0.81
cap 
C L M
M00921*
63.16
1002
1009
969
976
1
6.682
6.682
0.87
0.87
Pro only
C L M
M00624*
64.86
1003
1009
970
976
2
5.295
5.295
0.85
0.85
Pro only
C L M
M00175
62.50
1003
1012
970
979
2
6.165
6.165
0.80
0.80
AP-4 
C L M
M00962*
61.54
1003
1011
970
978
2
5.671
5.671
0.84
0.84
Pro only
C L M
M00751*
66.67
1004
1009
971
976
1
6.346
6.346
0.83
0.83
Pro only
C L M
M00271
66.67
1004
1009
971
976
1
5.330
5.330
0.83
0.83
AML-1a 
C L M
M00428*
63.16
1004
1011
971
978
1
4.065
4.065
0.81
0.81
Pro only
C L M
M00253
63.16
1004
1011
971
978
2
4.010
4.010
0.86
0.86
cap 
C L M
MA0089
55.56
1017
1022
987
992
1
5.823
5.553
0.87
0.86
TCF11-MafG
C M
M00801*
52.78
1025
1030
995
1000
1
5.524
5.860
0.85
0.86
Pro only
C M
MA0089
50.00
1026
1031
996
1001
2
5.919
4.933
0.87
0.83
TCF11-MafG
C M

LAGAN

LAGAN ALIGNMENT

                  10        20        30        40        50        60        70        80        90       100
seq1      acagcatatccatttgatggaattcattcgaccactgaaagcatagtgagtgaacgatctcaacggtgggctgagcaaagagatgcgtgtggcagggcta
           |  |   ||         | |  ||  |  | |||||                                           | || ||  ||| || |  
seq2      cccacccctc---------gcacccaccccccaactga-------------------------------------------gctgtgttaggcgggac--
                  10                 20                                                   30        40        

                 110       120       130       140       150       160       170       180       190       200
seq1      tgtgctgtagatggggagttggaagaatttgccctaaggtgggctggaaggggtgggtagtgggttggggggagtgatgctctctttgatctgcaggtgg
                    |  ||     || | | |||||    |||     ||  ||   || |    |||| |                           ||  ||
seq2      ----------agaggccacggggacagtttgct---agggacaatgagagaactgtgacccgggtggtaaa-----------------------agtggg
                      50        60           70        80        90       100                              110

                 210       220       230       240       250       260       270       280       290       300
seq1      tggaagtatTGATTCTTagcctctgCCTTTCCCCCAagagatgctcaatctactatatccccagccagttcttgcaacccataccttgctgggctgggct
          || | |   |  |||| ||  ||  ||||  |  |||    | |||  | ||                                                
seq2      tgcaggggaTTTTTCTCagaatcgcCCTTCTCTTCAaagtttcctccttttagag---------------------------------------------
                 120       130       140       150       160                                                  

                 310       320       330       340       350       360       370       380       390        40
seq1      caaagctcccaggtggcacccaggcactgaggggtggactgttcggggatttaggcccttccagagcgccccctccacttccaggcaccc-ccaatacac
                              ||     | | | |   |  | || |  | | |||         |||  |  |   |   ||||  |||| || | |   
seq2      --------------------caaaatataaagagaacaaagatcagaaaatgaggtt-------agccgcaaccgtaaaaccagatacccaccgaaaagt
                                170       180       190       200              210       220       230       2

          0       410       420                             430       440                   450          460  
seq1      atacgattttttaaaataaat----------------------attgcaaacataggttcaaca------------caaaactcctaatgt---gcactc
          || ||  |  |||    || |                      || |   |   ||| |||               |||||  || |   |    |  ||
seq2      atgcgggtgcttaccggaagttaccatcaaggcaagcccgagaatggtgcagccaggctcagagtttcattgctttcaaaatccccaggatcaaaccttc
          40       250       260       270       280       290       300       310       320       330       3

               470       480       490       500       510       520       530       540       550       560  
seq1      cactcccaaaatagattgagaactcctataaattccagcgttggcactctgggggcaactgagcccttctgtgcgctatgtcacctccccaaaggtcagg
          | |  ||    ||||||       ||| | | |   |  |   | | ||  | |||| || |   ||  |||    |                       
seq2      ctcctccgccttagattcttcttgcctgtta-tcaaaatgggaggattccagaggcagcttatttctcttgttatttg----------------------
          40       350       360        370       380       390       400       410                           

               570       580       590       600       610       620       630       640       650       660  
seq1      gagagcagtcacaaaaggacagctctagccccagaacttcagttcattaggcaaagcctgaggttccggggcatggggaggagagaagggatcagctg--
             ||| |  | | ||| | | | |   |||      |||   || ||| |   |||||             |  |||  |||     |     ||||  
seq2      --aagccgggaaataagaataacacctacccaccg--ttcttgtccttaagatgagcct-------------actgggctgaggttgcgacctggctggt
              420       430       440         450       460       470                    480       490       5

                 670       680       690       700       710       720       730                       740    
seq1      aggagccaggaaacctgggttctgagcctggttcggaccctcagcaagttatttcttctctctgcgcctccgtttcct----------------cttctg
          |||| ||  | |||| ||                        || ||| |    |  | |||||  ||   |  |||                   |  |
seq2      aggaaccccgtaacccgg-----------------------taggaaggtgcaacagcgctctgttccctggcctcccaagaggagtttgaatctctgag
          00       510                              520       530       540       550       560       570     

             750       760       770       780       790       800       810       820       830       840    
seq1      taaAATGGGgcatgggcaaggcctggcaggggcggggctcgaacccgcggaaggcgacggcggctccggcccctcccggggcgggcggtcacgtgcgcga
          |  |||||| | |  | || |||   |  |  |    | ||||          ||  |         || ||  |     ||  ||| |    || |   
seq2      ttgAATGGGaccttaggaaagcccaaccagaaccaaacccgaat---------gcagcttttcactgggacctcctgccagcttgcgatgggttgtgtag
            580       590       600       610                620       630       640       650       660      

             850       860       870       880       890                  900                                 
seq1      tcacgcggtcctacccggaagcgCGCCCGGGCtcctgcaggcggggcg-----------ctgtgcgcgc-------------------------------
          | || |   ||| | |    || | |  ||||| ||   || |||              ||||| | |                                
seq2      taacccatccctgctcacc-gctCCCTGGGGCtgctcagggtgggattgctgaccccacctgtgtgtgaatgagtgacccaaatataaactgtccagttg
           670       680        690       700       710       720       730       740       750       760     

                                                                 910       920                                
seq1      --------------------------------------------------cgcgatccggtacgtgggcct-----------------------------
                                                            | |  ||  |   |||| |||                             
seq2      cagaggaggtaggagctaatgtgtcatcaacgcttgctccacataaaggacaccttctagcttgtggtccttaaaatgggggaacctgtgacttctcagc
            770       780       790       800       810       820       830       840       850       860     

                    930       940                  950       960       970       980               990      10
seq1      ------cCGGGCTGTCCCCTCTgggg-----------gcggcgatcctccctccggagccccccttcaaccctcccggaagtg--------aggaccAGG
                || || ||||| ||||  ||           | ||  | |   ||  | ||   ||       |  | | |              ||| ||| |
seq2      ccgtgtcCAGGTTGTCCACTCTcaggaacaggcggcagtggaaaccagaccctctgaatgccttcatgccttttctgccttaagcatttgcaggcccAAG
            870       880       890       900       910       920       930       940       950       960     

          00      1010      1020                      1030      1040      1050      1060      1070            
seq1      GATGCTGTGCTGCTctcccatg----------------agccagtcaccgagtcggtctgctgcagccctttctgaacctctggccgtctggatg-----
          |||||||||||||| |    ||                | | ||   |  ||  |  ||||||    | || |  |  ||  |  |    |||||     
seq2      GATGCTGTGCTGCTgttgtctgctgacctggtcagagtatctagctcctcagaagccctgctgtgtgctttgccaaggct--gaactcacggatgtgacc
            970       980       990      1000      1010      1020      1030      1040        1050      1060   

              1080      1090      
seq1      -----ctccactgtgcttgccaag
               |  | || | |     |||
seq2      tttgccctcgcttttccctggaag
             1070      1080       

LAGAN ALIGNED HITS

Matrix
Identity
Seq1 from
Seq1 to
Seq2 from
Seq2 to
Strand
Score1
Score2
Rel.Score1
Rel.Score2
Factor
Found by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M00493*
57.89
210
217
120
127
1
6.057
6.131
0.88
0.88
Pro only
L C M
M00494*
57.89
210
217
120
127
1
5.247
5.439
0.84
0.84
Pro only
L C M
M00497*
57.89
210
217
120
127
1
4.893
4.146
0.85
0.82
Pro only
L C M
M00498*
57.89
210
217
120
127
1
5.533
5.233
0.88
0.87
Pro only
L C M
M00499*
57.89
210
217
120
127
1
4.898
6.782
0.85
0.93
Pro only
L C M
M00500*
57.89
210
217
120
127
1
4.080
5.383
0.81
0.86
Pro only
L C M
MA0039
52.50
226
235
136
145
2
6.554
7.840
0.85
0.89
Gklf
L C M
MA0039
55.00
227
236
137
146
2
8.040
6.547
0.89
0.85
Gklf
L C M
MA0080
55.56
227
232
137
142
2
5.116
5.496
0.85
0.87
SPI-1
L C M
MA0095
50.00
748
753
579
584
2
5.236
5.236
0.84
0.84
Yin-Yang
L M
M00469*
51.28
868
876
689
697
2
7.536
10.030
0.91
0.99
Pro only
L only
M00470*
51.28
868
876
689
697
2
8.061
10.761
0.90
0.98
Pro only
L only
MA0003
51.28
868
876
689
697
2
7.536
10.030
0.91
0.99
AP2alpha
L only
M00253
50.00
925
932
873
880
2
4.480
2.716
0.88
0.81
cap 
L M
M00921*
52.63
928
935
876
883
1
5.986
5.826
0.84
0.84
Pro only
L M
M00960*
50.00
929
938
877
886
2
9.445
8.655
0.93
0.90
Pro only
L M
M00083
50.00
932
939
880
887
2
9.570
6.396
0.95
0.82
MZF1 
L M
M00075
60.00
996
1005
963
972
1
5.517
4.749
0.85
0.82
GATA-1 
L C M
M00076
60.00
996
1005
963
972
1
5.759
5.522
0.86
0.85
GATA-2 
L C M
M00253
57.89
996
1003
963
970
2
5.230
5.454
0.91
0.92
cap 
L C M
MA0098
61.11
997
1002
964
969
2
5.373
7.229
0.89
0.97
c-ETS
L C M
M00624*
62.16
998
1004
965
971
2
6.759
6.759
0.90
0.90
Pro only
L C M
MA0035
61.11
998
1003
965
970
1
6.686
6.686
0.98
0.98
GATA-1
L C M
MA0036
62.86
998
1002
965
969
1
5.978
5.978
0.96
0.96
GATA-2
L C M
M00253
63.16
999
1006
966
973
2
4.659
4.659
0.89
0.89
cap 
L C M
M00253
63.16
1001
1008
968
975
2
2.723
2.723
0.81
0.81
cap 
L C M
M00921*
63.16
1002
1009
969
976
1
6.682
6.682
0.87
0.87
Pro only
L C M
M00175
62.50
1003
1012
970
979
2
6.165
6.165
0.80
0.80
AP-4 
L C M
M00624*
64.86
1003
1009
970
976
2
5.295
5.295
0.85
0.85
Pro only
L C M
M00962*
61.54
1003
1011
970
978
2
5.671
5.671
0.84
0.84
Pro only
L C M
M00253
63.16
1004
1011
971
978
2
4.010
4.010
0.86
0.86
cap 
L C M
M00271
66.67
1004
1009
971
976
1
5.330
5.330
0.83
0.83
AML-1a 
L C M
M00428*
63.16
1004
1011
971
978
1
4.065
4.065
0.81
0.81
Pro only
L C M
M00751*
66.67
1004
1009
971
976
1
6.346
6.346
0.83
0.83
Pro only
L C M

MAVID

MAVID ALIGNMENT

                  10        20        30        40        50        60        70        80        90       100
seq1      acagcatatccatttgatggaattcattcgaccactgaaagcatagtgagtgaacgatctcaacggtgggctgagcaaagagatgcgtgtggcagggcta
           |  |   ||         | |  ||  |  | |||||                               |||| |  | | |   |    | || ||  |
seq2      cccacccctc---------gcacccaccccccaactga-------------------------------gctgtgttaggcgggacagaggccacgggga
                  10                 20                                       30        40        50        60

                    110       120       130       140       150         160       170       180       190     
seq1      ---tgtgctgtagatggggagttggaagaatttgccctaaggtgggctggaaggggtgggta--gtgggttggggggagtgatgctctctttgatctgca
             | ||||    | ||  | |  ||  | | || ||                ||||||  |  ||||||   |||||                      
seq2      cagtttgct----agggacaatgagagaactgtgacc---------------cgggtggtaaaagtgggtgcagggga----------------------
                      70        80        90                      100       110                               

            200       210       220       230       240       250       260       270       280       290     
seq1      ggtggtggaagtatTGATTCTTagcctctgCCTTTCCCCCAagagatgctcaatctactatatccccagccagttcttgcaacccataccttgctgggct
                        |  |||| ||  ||  ||||  |  |||    | ||                   ||  ||   ||||   |||            
seq2      --------------TTTTTCTCagaatcgcCCTTCTCTTCAaagtttcct-------------------ccttttagagcaaaatata----------aa
                      120       130       140       150                          160       170                

            300       310       320       330       340       350       360       370                         
seq1      gggctcaaagctcccaggtggcacccaggcactgaggggtggactgttcggggatttaggcccttccagagcgcc-----ccctcc--------------
          | |  ||||| |             |||  | |||||                  |||| | |  ||  |   ||     ||| ||              
seq2      gagaacaaagat-------------cagaaaatgagg------------------ttagccgcaaccgtaaaaccagatacccaccgaaaagtatgcggg
           180                    190       200                         210       220       230       240     

                380       390       400       410       420       430             440          450       460  
seq1      -----acttccaggcacccccaatacacatacgattttttaaaataaatattgcaaacat------aggttcaacaca---aaactcctaatgtgcac--
               ||    ||  |||  |||  ||    |||            |||  ||||  ||       || ||||   |    ||| |||  | |  ||   
seq2      tgcttaccggaagttaccatcaaggcaagcccga-----------gaatggtgcagccaggctcagagtttcattgctttcaaaatccccaggatcaaac
            250       260       270                  280       290       300       310       320       330    

                   470       480       490       500       510       520       530       540       550       5
seq1      --tccactcccaaaatagattgagaactcctataaattccagcgttggcactctgggggcaactgagcccttctgtgcgctatgtcacctccccaaaggt
            ||| |  ||    ||||||       ||| |  ||   |  |   | | ||  | |||| || |   ||  |||    ||| | |             
seq2      cttcctcctccgccttagattcttcttgcctgt-tatcaaaatgggaggattccagaggcagcttatttctcttgt----tatttga-------------
             340       350       360        370       380       390       400           410                   

          60       570       580        590       600       610       620               630       640       65
seq1      cagggagagcagtcacaaaaggacagctc-tagccccagaacttcagttcattaggcaaagcct--------gaggttccggggcatggggaggagagaa
                 ||| |  | | ||| | | | | || || | |   |||   || ||| |   |||||        |||||| ||                   
seq2      -------agccgggaaataagaataacacctacccaccg---ttcttgtccttaagatgagcctactgggctgaggttgcg-------------------
                  420       430       440          450       460       470       480                          

          0       660             670       680       690       700       710       720       730             
seq1      gggatcagctg------aggagccaggaaacctgggttctgagcctggttcggaccctcagcaagttatttcttctctctgcgcctcc--------gttt
                | |||      |||| ||  | |||| ||              | |||   |  ||||      |||  || ||| ||||||        ||||
seq2      ------acctggctggtaggaaccccgtaacccgg--------------taggaaggt--gcaacagcgctctgttccctg-gcctcccaagaggagttt
                490       500       510                     520         530       540        550       560    

            740         750       760       770       780       790         800            810       820      
seq1      cctcttctg--taaAATGGGgcatgggcaaggcctggcaggggcggggctcgaacccg--cggaaggcgacggcggct-----ccggcccctcccggg-g
               ||||  |  |||||| | |  | || ||                 | |||| |  |  ||  |||  || |||     | ||  ||||| |   |
seq2      gaatctctgagttgAATGGGaccttaggaaagc-----------------ccaaccagaaccaaacccgaatgcagcttttcactgggacctcctgccag
             570       580       590                        600       610       620       630       640       

            830       840       850       860       870         880       890        900                      
seq1      cgggcggtcacgtgcgcgatcacgcggtcctacccggaagcgcgccc--gggctcctgcaggcggggc-gctgtgcgcgcc-------------------
          |  ||| |    || |   | || |   ||| | |   | ||| |||  ||||| ||   || |||   ||||  | | ||                   
seq2      cttgcgatgggttgtgtagtaacccatccctgctc---accgctccctggggctgctcagggtgggattgctgaccccacctgtgtgtgaatgagtgacc
          650       660       670       680          690       700       710       720       730       740    

                                                                                                  910         
seq1      ------------------------------------------------------------------------------------gcgatcc---------
                                                                                              | | |||         
seq2      caaatataaactgtccagttgcagaggaggtaggagctaatgtgtcatcaacgcttgctccacataaaggacaccttctagcttgtggtccttaaaatgg
             750       760       770       780       790       800       810       820       830       840    

                  920                    930       940            950              960             970       9
seq1      -ggtacgtgggcct-------------cCGGGCTGTCCCCTCTgggg-----gcggcgatcct-------ccctccggagccc------cccttcaaccc
           || || || | ||             || || ||||| ||||  ||     |||||  |          ||||| | |  ||      || ||    ||
seq2      gggaacctgtgacttctcagcccgtgtcCAGGTTGTCCACTCTcaggaacaggcggcagtggaaaccagaccctctgaatgccttcatgccttttctgcc
             850       860       870       880       890       900       910       920       930       940    

          80        990      1000      1010         1020      1030      1040        1050      1060       1070 
seq1      tcccggaagtg-aggaccAGGGATGCTGTGCTGCTct---ccCATGAGccAGTCACCgagtcggtctgct--gcagccctttctgaacctctggcc-gtc
          |   | |  || ||| ||| ||||||||||||||| |   |   ||| |  ||||  |  ||   || ||  | ||||||        || || |  | |
seq2      ttaagcatttgcaggcccAAGGATGCTGTGCTGCTgttgtctGCTGACctGGTCAGAgtatctagctcctcagaagccctgctgtgtgctttgccaaggc
             950       960       970       980       990      1000      1010      1020      1030      1040    

               1080         1090                     
seq1      tggatgctccactgtgc---ttgcc---------------aag
          || |  | |   ||||    |||||               |||
seq2      tgaactcacggatgtgacctttgccctcgcttttccctggaag
            1050      1060      1070      1080       

MAVID ALIGNED HITS

Matrix
Identity
Seq1 from
Seq1 to
Seq2 from
Seq2 to
Strand
Score1
Score2
Rel.Score1
Rel.Score2
Factor
Found by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M00493*
57.89
210
217
120
127
1
6.057
6.131
0.88
0.88
Pro only
M C L
M00494*
57.89
210
217
120
127
1
5.247
5.439
0.84
0.84
Pro only
M C L
M00497*
57.89
210
217
120
127
1
4.893
4.146
0.85
0.82
Pro only
M C L
M00498*
57.89
210
217
120
127
1
5.533
5.233
0.88
0.87
Pro only
M C L
M00499*
57.89
210
217
120
127
1
4.898
6.782
0.85
0.93
Pro only
M C L
M00500*
57.89
210
217
120
127
1
4.080
5.383
0.81
0.86
Pro only
M C L
MA0039
52.50
226
235
136
145
2
6.554
7.840
0.85
0.89
Gklf
M C L
MA0039
55.00
227
236
137
146
2
8.040
6.547
0.89
0.85
Gklf
M C L
MA0080
55.56
227
232
137
142
2
5.116
5.496
0.85
0.87
SPI-1
M C L
MA0095
50.00
748
753
579
584
2
5.236
5.236
0.84
0.84
Yin-Yang
M L
M00253
50.00
925
932
873
880
2
4.480
2.716
0.88
0.81
cap 
M L
M00921*
52.63
928
935
876
883
1
5.986
5.826
0.84
0.84
Pro only
M L
M00960*
50.00
929
938
877
886
2
9.445
8.655
0.93
0.90
Pro only
M L
M00083
50.00
932
939
880
887
2
9.570
6.396
0.95
0.82
MZF1 
M L
M00075
60.00
996
1005
963
972
1
5.517
4.749
0.85
0.82
GATA-1 
M C L
M00076
60.00
996
1005
963
972
1
5.759
5.522
0.86
0.85
GATA-2 
M C L
M00253
57.89
996
1003
963
970
2
5.230
5.454
0.91
0.92
cap 
M C L
MA0098
61.11
997
1002
964
969
2
5.373
7.229
0.89
0.97
c-ETS
M C L
M00624*
62.16
998
1004
965
971
2
6.759
6.759
0.90
0.90
Pro only
M C L
MA0035
61.11
998
1003
965
970
1
6.686
6.686
0.98
0.98
GATA-1
M C L
MA0036
62.86
998
1002
965
969
1
5.978
5.978
0.96
0.96
GATA-2
M C L
M00253
63.16
999
1006
966
973
2
4.659
4.659
0.89
0.89
cap 
M C L
M00253
63.16
1001
1008
968
975
2
2.723
2.723
0.81
0.81
cap 
M C L
M00921*
63.16
1002
1009
969
976
1
6.682
6.682
0.87
0.87
Pro only
M C L
M00175
62.50
1003
1012
970
979
2
6.165
6.165
0.80
0.80
AP-4 
M C L
M00624*
64.86
1003
1009
970
976
2
5.295
5.295
0.85
0.85
Pro only
M C L
M00962*
61.54
1003
1011
970
978
2
5.671
5.671
0.84
0.84
Pro only
M C L
M00253
63.16
1004
1011
971
978
2
4.010
4.010
0.86
0.86
cap 
M C L
M00271
66.67
1004
1009
971
976
1
5.330
5.330
0.83
0.83
AML-1a 
M C L
M00428*
63.16
1004
1011
971
978
1
4.065
4.065
0.81
0.81
Pro only
M C L
M00751*
66.67
1004
1009
971
976
1
6.346
6.346
0.83
0.83
Pro only
M C L
MA0089
55.56
1017
1022
987
992
1
5.823
5.553
0.87
0.86
TCF11-MafG
M C
M00801*
52.78
1025
1030
995
1000
1
5.524
5.860
0.85
0.86
Pro only
M C
MA0089
50.00
1026
1031
996
1001
2
5.919
4.933
0.87
0.83
TCF11-MafG
M C

BLASTZ

BLASTZ ALIGNMENT

                  10        20        30        40        50        60        70        80        90       100
seq1      acagcatatccatttgatggaattcattcgaccactgaaagcatagtgagtgaacgatctcaacggtgggctgagcaaagagatgcgtgtggcagggcta
           |  |   ||      |         |  |     | |      |  |||   |||    ||          ||  |        |      | |||   
seq2      cccacccctcgcacccaccccccaactgagctgtgttaggcgggacagaggccacggggacagtttgctagggacaatgagagaactgtgacccgggtgg
                  10        20        30        40        50        60        70        80        90       100

                 110       120       130       140       150       160       170       180       190       200
seq1      tgtgctgtagatggggagttggaagaatttgccctaaggtgggctggaaggggtgggtagtgggttggggggagtgatgctctctttgatctgcaggtgg
          |        |    || | |            |              |         |  | |               |  |            | | ||
seq2      taaaagtgggtgcaggggatttttctcagaatcgcccttctcttcaaagtttcctccttttagagcaaaatataaagagaacaaagatcagaaaatgagg
                 110       120       130       140       150       160       170       180       190       200

                 210       220       230       240       250       260       270       280       290       300
seq1      tggaagtattgattcttagcctctgcctttcccccaagagatgctcaatctactatatccccagccagttcttgcaacccataccttgctgggctgggct
          |            |   | |   | ||   |    |  |   |     |   |   |    |   ||   |  ||     |    |              
seq2      ttagccgcaaccgtaaaaccagatacccaccgaaaagtatgcgggtgcttaccggaagttaccatcaaggcaagcccgagaatggtgcagccaggctcag
                 210       220       230       240       250       260       270       280       290       300

                 310       320       330       340       350       360       370       380       390       400
seq1      caaagctcccaggtggcacccaggcactgaggggtggactgttcggggatttaggcccttccagagcgccccctccacttccaggcacccccaatacaca
               |       |   |  |                 ||  || |   |  |  |   |     |    |           |  |       |      
seq2      agtttcattgctttcaaaatccccaggatcaaaccttcctcctccgccttagattcttcttgcctgttatcaaaatgggaggattccagaggcagcttat
                 310       320       330       340       350       360       370       380       390       400

                 410       420       430       440       450       460       470       480       490       500
seq1      tacgattttttaaaataaatattgcaaacataggttcaacacaaaactcctaatgtgcactccactcccaaaatagattgagaactcctataaattccag
          | |  || ||      |        | |   |        ||  | |                    || |    | |   |        |   |   ||
seq2      ttctcttgttatttgaagccgggaaataagaataacacctacccaccgttcttgtccttaagatgagcctactgggctgaggttgcgacctggctggtag
                 410       420       430       440       450       460       470       480       490       500

                 510       520       530       540       550       560       570       580       590       600
seq1      cgttggcactctgggggcaactgagcccttctgtgcgctatgtcacctccccaaaggtcagggagagcagtcacaaaaggacagctctagccccagaact
                |       ||      |   |             |  |    | || |||   ||   ||                 |  ||      ||  | 
seq2      gaaccccgtaacccggtaggaaggtgcaacagcgctctgttccctggcctcccaagaggagtttgaatctctgagttgaatgggaccttaggaaagccca
                 510       520       530       540       550       560       570       580       590       600

                 610       620       630       640       650       660       670       680       690       700
seq1      tcagttcattaggcaaagcctgaggttccggggcatggggaggagagaagggatcagctgaggagccaggaaacctgggttctgagcctggttcggaccc
           |        |  |  |        || |   |         |  ||   |     | |   |    |    | |   | ||   ||    |  ||   |
seq2      accagaaccaaacccgaatgcagcttttcactgggacctcctgccagcttgcgatgggttgtgtagtaacccatccctgctcaccgctccctggggctgc
                 610       620       630       640       650       660       670       680       690       700

                 710       720       730       740       750       760       770       780       790       800
seq1      tcagcaagttatttcttctctctgcgcctccgtttcctcttctgtaaaatggggcatgggcaaggcctggcaggggcggggctcgaacccgcggaaggcg
          ||||   |  ||| ||   | |  |              |     |||      |         ||   | |||   | |         |    | |   
seq2      tcagggtgggattgctgaccccacctgtgtgtgaatgagtgacccaaatataaactgtccagttgcagaggaggtaggagctaatgtgtcatcaacgctt
                 710       720       730       740       750       760       770       780       790       800

                 810       820       830       840       850       860       870       880       890       900
seq1      acggcggctccggcccctcccggggcgggcggtcacgtgcgcgatcacgcggtcctacccggaagcgcgcccgggctcctgcaggcggggcgctgtgcgc
           |  |   |   |  |  |     ||  | ||||        |      |         |  |  |     |  | |  | ||  |   |      ||| 
seq2      gctccacataaaggacaccttctagcttgtggtccttaaaatgggggaacctgtgacttctcagcccgtgtccaggttgtccactctcaggaacaggcgg
                 810       820       830       840       850       860       870       880       890       900

                 910       920       930       940       950       960       970       980       990      1000
seq1      gccgcgatccggtacgtgggcctccgggctgtcccctctgggggcggcgatcctccctccggagccccccttcaaccctcccggaagtgaggaccaggga
               ||  |   ||                | || | |  |      |    | |   |  |      ||      ||   |   |             
seq2      cagtggaaaccagaccctctgaatgccttcatgccttttctgccttaagcatttgcaggcccaaggatgctgtgctgctgttgtctgctgacctggtcag
                 910       920       930       940       950       960       970       980       990      1000

                1010      1020      1030      1040      1050      1060      1070      1080      1090      
seq1      tgctgtgctgctctcccatgagccagtcaccgagtcggtctgctgcagccctttctgaacctctggccgtctggatgctccactgtgcttgccaag
           |          |||  | |  |   |    |  | |    |    | | |           ||   |    |  |   ||     |         
seq2      agtatctagctcctcagaagccctgctgtgtgctttgccaaggctgaactcacggatgtgacctttgccctcgcttttccctggaag---------
                1010      1020      1030      1040      1050      1060      1070      1080                

BLASTZ ALIGNED HITS

No hits found

Run time: 107.9 sec