Alignment of NM_001487 and chr12:54396088-54399751
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frame to left to navigate through alignment. Matching bases in coding regions of
cDNA and genomic sequences are colored blue and capitalized. Matching bases in
UTR regions of cDNA and genomic sequences are colored red and capitalized. Light
blue (coding) or orange (UTR) bases mark the boundaries of gaps in either side
of the alignment (often splice sites).
cDNA NM_001487
CAGCGGgCAC GTGACATGGC CCCGGGGAGC CGAGGTGAGC GTCCAGCTTC 50
CGGAGCCGGA GGGGGCCCGG CGTACCCAGC CCCCAGCCCG ACGTGACCAT 100
GCTGTCCCGC CTCCTAAAAG AACACCAGGC CAAGCAGAAT GAACGCAAGG 150
AGCTGCAGGA AAAGAGGAGG CGAGAGGCTA TCACTGCAGC GACCTGCCTG 200
ACAGAAGCTT TGGTGGATCA CCTCAATGTG GGTGTGGCCC AGGCCTACAT 250
GAACCAGAGA AAGCTGGACC ATGAGGTGAA GACCCTACAG GTCCAGGCTG 300
CCCAATTTGC CAAGCAGACA GGCCAGTGGA TCGGAATGGT GGAGAACTTC 350
AACCAGGCAC TCAAGGAAAT TGGGGATGTG GAGAACTGGG CTCGGAGCAT 400
CGAGCTGGAC ATGCGCACCA TTGCCACTGC ACTGGAATAT GTCTACAAAG 450
GGCAGCTGCA GTCTGCCCCT TCCTAGCCCC TGTTCCCTCC CCaAACCCTA 500
TCCCTCCTAC CTCACCCGCA GGGGGAAGGA GGGAGGCTGA CAAGCCTTGA 550
ATAAAACACA AGCCTCC
Genomic chr12 :
taaagaacac ttcacctgcc ctccgcaacc ctctacctct cttccccgcc 54396037
aagatcttca cccaaggtct caagagggcg gttcccaacc tcacgtgaca 54396087
CAGCGGtCAC GTGACATGGC CCCGGGGAGC CGAGGTGAGC GtTCCAGCTT 54396137
CCGGAGCCGG AGGGGGCCCG GCGTACCCAG CCCCCAGCCC GACGTGACCA 54396187
TGCTGTCCCG CCTCCTAAAA GAACACCAGG CCAAGCAGAA TGAACGCAAG 54396237
GAGCTGCAGG gtgagccaaa tatcctgtcg gccgttttct cttcggccgc 54396287
ggcctagctt cagcccggag cctggatctc gagtaactaa ccatatccag 54396337
ggaaagacgc cagctagcgg gcaacgggca tgggggagag ggaatttcag 54396387
agaggctttt tttgaaactc ctttcccttg ccaactggct ccggtccctt 54396437
gggcaatact ccggtcccct cggcaacgcc cccaatcccc gacctgccgc 54396487
accttagccc cgcccctgcc ccggagcgcc ctgcctattg gccctgggag 54396537
cctctcgtcc tggcggcggg aaggagcgac tctggaggga ggagggtgtg 54396587
gggaaccccc cagagatggg cttcttggag gcctgaaacc accggaacgg 54396637
aggtggggca cttgtttcct gagtccgggc tggaaatctc ggagttaccg 54396687
attctgcggc cgagtagtgg agaaagagtg cctgggagtc aggagtcctg 54396737
ggcgctgccg ctgacttcct ggcgtccctg agtgagtcca tttccctccc 54396787
agggtaccag tttcctcatc tctaaaatga aagaggttgc gctatgtttt 54396837
gcaaggtcct tttcagctcc ggcattcaga gattagttaa gaaatttcgg 54396887
caactagcag aatagtaatg gatgggtagg gaacctttaa cactacccct 54396937
caaaaaacca agtctcccct ccaattcctt ttccccctct ccccagAAAA 54396987
GAGGAGGCGA GAGGCTATCA CTGCAGCGAC CTGCCTGACA GAAGCTTTGG 54397037
TGGATCACCT CAATGTGGGg tatggacctc ttatcaacat cagtttcctc 54397087
cttccccacc ccgcccaagt ttaggcactg gccagtctgg ccctcaaata 54397137
gctgttgaag gggtgggatg ttccactaat tcccctatcc taccccgccc 54397187
ctcccagctc tttgtagagc aacttgagtc aactctgagt cctagcactg 54397237
ggcaagggag gaacagctgc cgtggttaga gaagcagcca gatttcccct 54397287
tccccacgtt aacttccctg gcatttacaa cttgatgcca tctgcccacc 54397337
tcccttcacc cttccaagtc cagctgtcac ttcagcagga gggagagcac 54397387
cctccttcat tacagcttac caccctctcc tctgcctccc accctctggc 54397437
aagcctgggg agcagctggc aggaaagaga tggcagagct ggtggtggtg 54397487
agagtagaac ctgttccggg agctatggca gagccaggct gtctcttacc 54397537
ttcctattgg gtctctaggg accacaccct gccccagccc taaatgagaa 54397587
tgcaagtaac agccaaagac ttgggaaaaa gcaaagaaca ttgtctcttg 54397637
accctaagtg acccagaagc gtgcagagat gatgatttgc tagtctgcct 54397687
attggaagaa aggcagtatg gtaccttcca ccccaggtca agtagaacag 54397737
ctcggtgtga atccagagac tgagtcatcc aagtgagcca tgcaggggct 54397787
ggggtcatct ttgttactca tcttggggga aggttgagag aaagaaagtt 54397837
gtggctgggg cctctgatct cccttctctc caggcagctc tctttactca 54397887
gtgtgaatat agaagcaggt ggtcaatggg gaaaaccaga agttcaggaa 54397937
ttctcagggg agtctgtttc agttcctacc cgacccttga cagtgaccca 54397987
gctgtctccc aaaaagaagg aacagggtct gccctcccat ttcctccctc 54398037
ccacattggc acctcctggg ctctgctgtg cccatcattt gtgagattgg 54398087
cccaggcctt tccctcttct tttcctttgc tagatgccac cccactttca 54398137
gcttagaggg cagctaagcc aaagccagat tagaaagggt tttgtgttgc 54398187
tgcccacgcc tcctctcatt ccccggaaag gaaaacaaag gctcagtcta 54398237
tcttggcccc tgtcaggtgt cctgcccact ccctcagccc ccaccaaccc 54398287
cttccccgct ccagccccca cacattccag tgggtggggg caccggatgt 54398337
ggaatctcct ggctgagtag agctctgggg tgggaagtga aaaattcaac 54398387
agccaataaa ggagaacaat tattgcaggg gttggggagg gcaaaaaaca 54398437
ctggcagaag gttggggaca ccaaccccat ggtagtaatg gtaaccacag 54398487
cccatacctt gattgaaaag aaaaactagt gcctaaggca gaagggaggg 54398537
agagcatgtg tgtgtgtgtg tgtgtgtgtg tttgtgtgtg ttccttgatc 54398587
tgtgtgggca aaagcgaagg cttgggagag caactgagag ccgagaagaa 54398637
acccctggga taccctcttt tgacccaggg ttcctgggga gggggtttgt 54398687
actcccatcc taacccggct tcagggaggg gcccaatttc cctctccaac 54398737
ttcttgcata gatccctagg cttccaatca ctgccagatg tgttcctcct 54398787
gctggatttt cccagttttt ccatgcccct ttttccctcc cagctttttc 54398837
ctcagggata tcaccccagg ttttccctcc cttcccccac tcagctgcag 54398887
gaactccttt ttggggtttg gagctggtat gtttctagtc agctccgagc 54398937
ttggctctcc tgggaatcct gggagtgaaa ggaaggagct gggtttattt 54398987
gcatgtactg gtagtcattt gcatcacatc caaaaatggc caaaattatg 54399037
agccctgatt cttggctgaa ctcccactgc tgcaatggaa tattagtccc 54399087
ggagaccacc cccaactagc tggagctgat ctcctccctc ctccaacccc 54399137
ccagTGTGGC CCAGGCCTAC ATGAACCAGA GAAAGCTGGA CCATGAGGTG 54399187
AAGACCCTAC AGGTCCAGGC TGCCCAATTT GCCAAGCAGA CAGGCCAGTG 54399237
GATCGGAATG GTGGAGAACT TCAACCAGGC ACTCAAGgtg ggccatactc 54399287
cctacctcac caccccaatc ctgggccccc attggctgcc tccagtcagg 54399337
ttacctcagg tttaggttaa ggaggaagta gggtggtccc agaaacccca 54399387
tctatagccc cagtgtcaga aaaggtagag aaagaaagaa aagcagttgg 54399437
tgggtccaag taaagccttt tccaggagat gaataaaacg tattccccag 54399487
actggaagcc atactctacc cattctgatt cctgggctcc cacctcctct 54399537
cccccttccc agGAAATTGG GGATGTGGAG AACTGGGCTC GGAGCATCGA 54399587
GCTGGACATG CGCACCATTG CCACTGCACT GGAATATGTC TACAAAGGGC 54399637
AGCTGCAGTC TGCCCCTTCC TAGCCCCTGT TCCCTCCCCc AACCCTATCC 54399687
CTCCTACCTC ACCCGCAGGG GGAAGGAGGG AGGCTGACAA GCCTTGAATA 54399737
AAACACAAGC CTCCgtttct ctgtggtgtg tttcagagag ctactagctc 54399787
cagtgtcggg ggtgggagtg gaaggttcaa aggtggtttc cctgagggac 54399837
aggtaccttt tggg
Side by Side Alignment
00000001 cagcgggcacgtgacatggccccggggagccgaggtgagcg.tccagctt 00000049
>>>>>>>> |||||| |||||||||||||||||||||||||||||||||| |||||||| <<<<<<<<
54396088 cagcggtcacgtgacatggccccggggagccgaggtgagcgttccagctt 54396137
00000050 ccggagccggagggggcccggcgtacccagcccccagcccgacgtgacca 00000099
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
54396138 ccggagccggagggggcccggcgtacccagcccccagcccgacgtgacca 54396187
00000100 tgctgtcccgcctcctaaaagaacaccaggccaagcagaatgaacgcaag 00000149
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
54396188 tgctgtcccgcctcctaaaagaacaccaggccaagcagaatgaacgcaag 54396237
00000150 gagctgcagg 00000159
>>>>>>>> |||||||||| <<<<<<<<
54396238 gagctgcagg 54396247
00000160 aaaagaggaggcgagaggctatcactgcagcgacctgcctgacagaagct 00000209
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
54396984 aaaagaggaggcgagaggctatcactgcagcgacctgcctgacagaagct 54397033
00000210 ttggtggatcacctcaatgtggg 00000232
>>>>>>>> ||||||||||||||||||||||| <<<<<<<<
54397034 ttggtggatcacctcaatgtggg 54397056
00000233 tgtggcccaggcctacatgaaccagagaaagctggaccatgaggtgaaga 00000282
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
54399142 tgtggcccaggcctacatgaaccagagaaagctggaccatgaggtgaaga 54399191
00000283 ccctacaggtccaggctgcccaatttgccaagcagacaggccagtggatc 00000332
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
54399192 ccctacaggtccaggctgcccaatttgccaagcagacaggccagtggatc 54399241
00000333 ggaatggtggagaacttcaaccaggcactcaag 00000365
>>>>>>>> ||||||||||||||||||||||||||||||||| <<<<<<<<
54399242 ggaatggtggagaacttcaaccaggcactcaag 54399274
00000366 gaaattggggatgtggagaactgggctcggagcatcgagctggacatgcg 00000415
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
54399550 gaaattggggatgtggagaactgggctcggagcatcgagctggacatgcg 54399599
00000416 caccattgccactgcactggaatatgtctacaaagggcagctgcagtctg 00000465
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
54399600 caccattgccactgcactggaatatgtctacaaagggcagctgcagtctg 54399649
00000466 ccccttcctagcccctgttccctccccaaaccctatccctcctacctcac 00000515
>>>>>>>> ||||||||||||||||||||||||||| |||||||||||||||||||||| <<<<<<<<
54399650 ccccttcctagcccctgttccctcccccaaccctatccctcctacctcac 54399699
00000516 ccgcagggggaaggagggaggctgacaagccttgaataaaacacaagcct 00000565
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
54399700 ccgcagggggaaggagggaggctgacaagccttgaataaaacacaagcct 54399749
00000566 cc 00000567
>>>>>>>> || <<<<<<<<
54399750 cc 54399751