Alignment of NM_133854 and chr3:93180904-93183873
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frame to left to navigate through alignment. Matching bases in coding regions of
cDNA and genomic sequences are colored blue and capitalized. Matching bases in
UTR regions of cDNA and genomic sequences are colored red and capitalized. Light
blue (coding) or orange (UTR) bases mark the boundaries of gaps in either side
of the alignment (often splice sites).
cDNA NM_133854
GGCAGGCTGA GGGCGTCAGG GCAGTTCGCG ATGGCCGCGG CTGGTTCCGC 50
TGCTGTGTCA GGGGCCGGGA CCCCAGTGGC GGGGCCCACA GGCCGCGACC 100
TCTTTGCCGA GGGGCTCCTG GAGTTCCTGC GACCCGCGGT GCAGCAGCTC 150
GACTCTCACG TGCACGCGGT CAGAGAAAGC CAAGTAGAGC TCCGGGAACA 200
AATTGACAAC CTAGCTACAG AACTGTGCCG GATCAATGAG GATCAGAAAG 250
TGGCCCTGGA TCTGGACCCC TATGTTAAGA AGCTGCTTAA TGCCAGGCGA 300
CGAGTTGTCT TGGTCAACAA TATTTTACAG AATGCACAGG AACGACTAAG 350
GCGGTTAAAC CACAGCGTGG CCAAGGAAAC AGCTCGCAGG AGAGCTATGC 400
TGGATTCAGG AGTTTACCCT CCTGGTTCTC CAAGCAAATA AGCACGGGCC 450
CGTGACCTGA GTATACAAGT ACAATTCTCC AACGGCTTTG TCTGGTAGAC 500
ACGAGAAGAT TCCAGGAAAG TCTCTGTAGA CCTTTGATTT TTTTTGCACT 550
ATGTACTCAT TCATGTAGCC GCCTCAAGAA ACATGCGTAC GGCAGGACTA 600
TTTCCTAAAG AACCTCCATC ACAGCTTGTC CATCCAAGAA AGAGCCTCTA 650
CCTTTTGGGT TTTGTTAATC TTGAGACAAG ATCTCAGTAT GTAGTCCCGG 700
CTGGCCTCAA ACATGTCCTC TTGCCTTAGC CTCCTGAATG CTGGGATTAT 750
AATAGGCATG TGTCAGAGTG CCGGGCTCAA GCCTCTATAT ATTTCCCCCA 800
AAGAATACTA AGTAAATTAG GCATCGTGTG GTAGAAAATT GAGAAAACAC 850
CAGATTTAGT GAGAAAGTAT ACTCCTATTT CTCCCCCTCT GCTTCACCAC 900
AGTTCCTCTC AGAAGGTAAT AACCTTTCCA GGATCATCTT ACACTCTATA 950
ATGTTTAGGT TAACTCCTAT TAACAAGTTT CGCAACTGTT GCCTTCATTG 1000
CTACCCAAGG AGAGCATGCC AGATAGCGAG GATCCAAGGT CAAGGCAGAG 1050
CCTTGACAGC TAAGAGTCCT AAGCTTTTGC GATTTTTTTT TTGTTTAGAC 1100
TACATATTTT AAGGGCTAGA GGGATGGCTC AATGGTTAAG AACACTGGTG 1150
ATTCTTCCAG ATGGCGTCCA GTGCTTAGCG CCCACATGGT GACTCACAGC 1200
AGCCTCTAAC TCCAGCTCCA GGGGAACCCA ATGCCCTTGT CTGGCCTTTT 1250
GGCCCAGCAC ACACACACAT ATGATGCAGA TATATATGCA GGCAAAACAA 1300
CCATCCTCAT AAAATAAAAT TTAAAAGTTA CATATTTAAG CGCCATCCTT 1350
TCCAGGCTTA GCCAGCCAGT GTTAACCATC CTGTTACTCC TATTACTGGG 1400
GCTGGGCAGT TTCCTTTACC TGTAACTCCA CTTTGTTTAC AACTGAGGAC 1450
TTAGGTAAAG TCAAGGTAAA TAATTTATCC TCTTGGCCAC CCTGGCTTGA 1500
CTATGTTAAT ATTAAGTATT GCTCAACATT ATTAAATAAA TGCTTGTACT 1550
GGTTATTTTA ACAAAAAAAT TTATTTTATT ATGGTTTCAA AGGGTTCAGG 1600
ACATGGTCAC ACTGATGCAT ATTTTGGGGC CTATTTTGAG ACATGAGAAT 1650
GTGAGGTGAT CAAGCTTCCA AGAGAAGGGA ATGCTGGACT CTGCCATTTA 1700
TCCCTTTATT CTGTCCATGC ACTGAGCTCA TAAGATGCTT TCACCCCACA 1750
TTTAGGGTTA ATCCTTTGCA GAAATTTCAG GTTATTTTAG GCCAAGCTGA 1800
AGAAATTAGC CATCACAATG GTATCCTAGG AATCTATTAC TTTCAATTTA 1850
TATAATTTAA AACAGCAATC TCAATGTTTA TAATAAAAGA CTCAACTT
Genomic chr3 (reverse strand):
aggactccat ttcccagcta tcccactgcc gtctgggctg tatatctaag 93183924
cgccctctcg cggtgcacag cggcggtctg gagttcccgg cgaccctcgc 93183874
GGCAGGCTGA GGGCGTCAGG GCAGTTCGCG ATGGCCGCGG CTGGTTCCGC 93183824
TGCTGTGTCA GGGGCCGGGA CCCCAGTGGC GGGGCCCACA GGCCGCGACC 93183774
TCTTTGCCGA GGGGCTCCTG GAGTTCCTGC GACCCGCGGT GCAGCAGCTC 93183724
GACTCTCACG TGCACGCGGT CAGgtgcagg accgggttgc tgggggcggg 93183674
gcctagggaa ctggctttgt aggggcgggg ccccgaagaa atactagata 93183624
cattcttgag acactgatgt tgagactggg taaataggcg gaagggcctg 93183574
ggtgaggcct tgaagttgag gttggcttgt ctcagtattt ggggaataag 93183524
tagaattcgt ttcccgcgtc ccagtcactg accgttgtag acttttgtac 93183474
cactttgcag AGAAAGCCAA GTAGAGCTCC GGGAACAAAT TGACAACCTA 93183424
GCTACAGgtg agtgagcagc caggatacct agaatccctg atctcacttt 93183374
cgggaacttt gtttccccag gttttaggct aagtttctgt cacttgcttc 93183324
tcaatatcag aactacccaa ggactccaat ttctggggat attttaggac 93183274
agaatggaag aagggaaggt gtctgtggcc cacacaagac tgcaagagta 93183224
tttttcatcc cattcctctc ttccattccc taagaacaaa aaatgagcca 93183174
ttagatgttg gttgcccatt tcctcttccc agAACTGTGC CGGATCAATG 93183124
AGGATCAGAA AGTGGCCCTG GATCTGGACC CCTATGTTAA GAAGCTGCTT 93183074
AATGCCAGGC GACGAGTTGT CTTGGTCAAC AATATTTTAC AGAATGCACA 93183024
Ggtaaaataa taaaatagta ataataataa taatcccagc agtgcatggt 93182974
ggtacatgct gtagtttcag catttggtag gctaaggcaa gaaggatggc 93182924
ttgaactttg agcagagcct ggactatcaa atcagctagg gctacatagc 93182874
atgaccctct ttcaaaaaaa tttcttcttg tttatcctgc tttatgtctt 93182824
caacactgtg aagcaactat gggggaaaag agtggtgtta actaatctga 93182774
taataaaggc ccatattccc ctcaccccat tactaggcct caaactagac 93182724
aagtgccaat tcttaacttc taattcttaa cttctagtgg ctgtcattta 93182674
caagtccatt ttaacgtaaa gggctggctt gaaaagagcc aaagccagct 93182624
ggacatataa gcaggcaaat ttctgagttt gaggccatcc tggtctacag 93182574
agcaagttcc agggctacac agagaaaaaa cagtctgggg acaggggcag 93182524
aggggactca gttaaaacct tttacagcag tcattagatt ccccatcttc 93182474
ctgtcttaca gGAACGACTA AGGCGGTTAA ACCACAGCGT GGCCAAGGAA 93182424
ACAGCTCGCA GGAGAGCTAT GCTGGATTCA GGAGTTTACC CTCCTGGTTC 93182374
TCCAAGCAAA TAAGCACGGG CCCGTGACCT GAGTATACAA GTACAATTCT 93182324
CCAACGGCTT TGTCTGGTAG ACACGAGAAG ATTCCAGGAA AGTCTCTGTA 93182274
GACCTTTGAT TTTTTTTGCA CTATGTACTC ATTCATGTAG CCGCCTCAAG 93182224
AAACATGCGT ACGGCAGGAC TATTTCCTAA AGAACCTCCA TCACAGCTTG 93182174
TCCATCCAAG AAAGAGCCTC TACCTTTTGG GTTTTGTTAA TCTTGAGACA 93182124
AGATCTCAGT ATGTAGTCCC GGCTGGCCTC AAACATGTCC TCTTGCCTTA 93182074
GCCTCCTGAA TGCTGGGATT ATAATAGGCA TGTGTCAGAG TGCCGGGCTC 93182024
AAGCCTCTAT ATATTTCCCC CAAAGAATAC TAAGTAAATT AGGCATCGTG 93181974
TGGTAGAAAA TTGAGAAAAC ACCAGATTTA GTGAGAAAGT ATACTCCTAT 93181924
TTCTCCCCCT CTGCTTCACC ACAGTTCCTC TCAGAAGGTA ATAACCTTTC 93181874
CAGGATCATC TTACACTCTA TAATGTTTAG GTTAACTCCT ATTAACAAGT 93181824
TTCGCAACTG TTGCCTTCAT TGCTACCCAA GGAGAGCATG CCAGATAGCG 93181774
AGGATCCAAG GTCAAGGCAG AGCCTTGACA GCTAAGAGTC CTAAGCTTTT 93181724
GCGATTTTTT TTTTGTTTAG ACTACATATT TTAAGGGCTA GAGGGATGGC 93181674
TCAATGGTTA AGAACACTGG TGATTCTTCC AGATGGCGTC CAGTGCTTAG 93181624
CGCCCACATG GTGACTCACA GCAGCCTCTA ACTCCAGCTC CAGGGGAACC 93181574
CAATGCCCTT GTCTGGCCTT TTGGCCCAGC ACACACACAC ATATGATGCA 93181524
GATATATATG CAGGCAAAAC AACCATCCTC ATAAAATAAA ATTTAAAAGT 93181474
TACATATTTA AGCGCCATCC TTTCCAGGCT TAGCCAGCCA GTGTTAACCA 93181424
TCCTGTTACT CCTATTACTG GGGCTGGGCA GTTTCCTTTA CCTGTAACTC 93181374
CACTTTGTTT ACAACTGAGG ACTTAGGTAA AGTCAAGGTA AATAATTTAT 93181324
CCTCTTGGCC ACCCTGGCTT GACTATGTTA ATATTAAGTA TTGCTCAACA 93181274
TTATTAAATA AATGCTTGTA CTGGTTATTT TAACAAAAAA ATTTATTTTA 93181224
TTATGGTTTC AAAGGGTTCA GGACATGGTC ACACTGATGC ATATTTTGGG 93181174
GCCTATTTTG AGACATGAGA ATGTGAGGTG ATCAAGCTTC CAAGAGAAGG 93181124
GAATGCTGGA CTCTGCCATT TATCCCTTTA TTCTGTCCAT GCACTGAGCT 93181074
CATAAGATGC TTTCACCCCA CATTTAGGGT TAATCCTTTG CAGAAATTTC 93181024
AGGTTATTTT AGGCCAAGCT GAAGAAATTA GCCATCACAA TGGTATCCTA 93180974
GGAATCTATT ACTTTCAATT TATATAATTT AAAACAGCAA TCTCAATGTT 93180924
TATAATAAAA GACTCAACTT gaattctact gaggttatag aagccaaatg 93180874
tagttgctac atattgaaga aaaataaaac caaaagccct agtaggaagt 93180824
actttaatca tttttcttag
Side by Side Alignment
00000001 ggcaggctgagggcgtcagggcagttcgcgatggccgcggctggttccgc 00000050
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93183873 ggcaggctgagggcgtcagggcagttcgcgatggccgcggctggttccgc 93183824
00000051 tgctgtgtcaggggccgggaccccagtggcggggcccacaggccgcgacc 00000100
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93183823 tgctgtgtcaggggccgggaccccagtggcggggcccacaggccgcgacc 93183774
00000101 tctttgccgaggggctcctggagttcctgcgacccgcggtgcagcagctc 00000150
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93183773 tctttgccgaggggctcctggagttcctgcgacccgcggtgcagcagctc 93183724
00000151 gactctcacgtgcacgcggtcag 00000173
>>>>>>>> ||||||||||||||||||||||| <<<<<<<<
93183723 gactctcacgtgcacgcggtcag 93183701
00000174 agaaagccaagtagagctccgggaacaaattgacaacctagctacag 00000220
>>>>>>>> ||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93183463 agaaagccaagtagagctccgggaacaaattgacaacctagctacag 93183417
00000221 aactgtgccggatcaatgaggatcagaaagtggccctggatctggacccc 00000270
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93183141 aactgtgccggatcaatgaggatcagaaagtggccctggatctggacccc 93183092
00000271 tatgttaagaagctgcttaatgccaggcgacgagttgtcttggtcaacaa 00000320
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93183091 tatgttaagaagctgcttaatgccaggcgacgagttgtcttggtcaacaa 93183042
00000321 tattttacagaatgcacag 00000339
>>>>>>>> ||||||||||||||||||| <<<<<<<<
93183041 tattttacagaatgcacag 93183023
00000340 gaacgactaaggcggttaaaccacagcgtggccaaggaaacagctcgcag 00000389
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93182462 gaacgactaaggcggttaaaccacagcgtggccaaggaaacagctcgcag 93182413
00000390 gagagctatgctggattcaggagtttaccctcctggttctccaagcaaat 00000439
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93182412 gagagctatgctggattcaggagtttaccctcctggttctccaagcaaat 93182363
00000440 aagcacgggcccgtgacctgagtatacaagtacaattctccaacggcttt 00000489
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93182362 aagcacgggcccgtgacctgagtatacaagtacaattctccaacggcttt 93182313
00000490 gtctggtagacacgagaagattccaggaaagtctctgtagacctttgatt 00000539
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93182312 gtctggtagacacgagaagattccaggaaagtctctgtagacctttgatt 93182263
00000540 ttttttgcactatgtactcattcatgtagccgcctcaagaaacatgcgta 00000589
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93182262 ttttttgcactatgtactcattcatgtagccgcctcaagaaacatgcgta 93182213
00000590 cggcaggactatttcctaaagaacctccatcacagcttgtccatccaaga 00000639
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93182212 cggcaggactatttcctaaagaacctccatcacagcttgtccatccaaga 93182163
00000640 aagagcctctaccttttgggttttgttaatcttgagacaagatctcagta 00000689
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93182162 aagagcctctaccttttgggttttgttaatcttgagacaagatctcagta 93182113
00000690 tgtagtcccggctggcctcaaacatgtcctcttgccttagcctcctgaat 00000739
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93182112 tgtagtcccggctggcctcaaacatgtcctcttgccttagcctcctgaat 93182063
00000740 gctgggattataataggcatgtgtcagagtgccgggctcaagcctctata 00000789
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93182062 gctgggattataataggcatgtgtcagagtgccgggctcaagcctctata 93182013
00000790 tatttcccccaaagaatactaagtaaattaggcatcgtgtggtagaaaat 00000839
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93182012 tatttcccccaaagaatactaagtaaattaggcatcgtgtggtagaaaat 93181963
00000840 tgagaaaacaccagatttagtgagaaagtatactcctatttctccccctc 00000889
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181962 tgagaaaacaccagatttagtgagaaagtatactcctatttctccccctc 93181913
00000890 tgcttcaccacagttcctctcagaaggtaataacctttccaggatcatct 00000939
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181912 tgcttcaccacagttcctctcagaaggtaataacctttccaggatcatct 93181863
00000940 tacactctataatgtttaggttaactcctattaacaagtttcgcaactgt 00000989
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181862 tacactctataatgtttaggttaactcctattaacaagtttcgcaactgt 93181813
00000990 tgccttcattgctacccaaggagagcatgccagatagcgaggatccaagg 00001039
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181812 tgccttcattgctacccaaggagagcatgccagatagcgaggatccaagg 93181763
00001040 tcaaggcagagccttgacagctaagagtcctaagcttttgcgattttttt 00001089
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181762 tcaaggcagagccttgacagctaagagtcctaagcttttgcgattttttt 93181713
00001090 tttgtttagactacatattttaagggctagagggatggctcaatggttaa 00001139
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181712 tttgtttagactacatattttaagggctagagggatggctcaatggttaa 93181663
00001140 gaacactggtgattcttccagatggcgtccagtgcttagcgcccacatgg 00001189
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181662 gaacactggtgattcttccagatggcgtccagtgcttagcgcccacatgg 93181613
00001190 tgactcacagcagcctctaactccagctccaggggaacccaatgcccttg 00001239
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181612 tgactcacagcagcctctaactccagctccaggggaacccaatgcccttg 93181563
00001240 tctggccttttggcccagcacacacacacatatgatgcagatatatatgc 00001289
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181562 tctggccttttggcccagcacacacacacatatgatgcagatatatatgc 93181513
00001290 aggcaaaacaaccatcctcataaaataaaatttaaaagttacatatttaa 00001339
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181512 aggcaaaacaaccatcctcataaaataaaatttaaaagttacatatttaa 93181463
00001340 gcgccatcctttccaggcttagccagccagtgttaaccatcctgttactc 00001389
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181462 gcgccatcctttccaggcttagccagccagtgttaaccatcctgttactc 93181413
00001390 ctattactggggctgggcagtttcctttacctgtaactccactttgttta 00001439
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181412 ctattactggggctgggcagtttcctttacctgtaactccactttgttta 93181363
00001440 caactgaggacttaggtaaagtcaaggtaaataatttatcctcttggcca 00001489
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181362 caactgaggacttaggtaaagtcaaggtaaataatttatcctcttggcca 93181313
00001490 ccctggcttgactatgttaatattaagtattgctcaacattattaaataa 00001539
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181312 ccctggcttgactatgttaatattaagtattgctcaacattattaaataa 93181263
00001540 atgcttgtactggttattttaacaaaaaaatttattttattatggtttca 00001589
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181262 atgcttgtactggttattttaacaaaaaaatttattttattatggtttca 93181213
00001590 aagggttcaggacatggtcacactgatgcatattttggggcctattttga 00001639
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181212 aagggttcaggacatggtcacactgatgcatattttggggcctattttga 93181163
00001640 gacatgagaatgtgaggtgatcaagcttccaagagaagggaatgctggac 00001689
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181162 gacatgagaatgtgaggtgatcaagcttccaagagaagggaatgctggac 93181113
00001690 tctgccatttatccctttattctgtccatgcactgagctcataagatgct 00001739
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181112 tctgccatttatccctttattctgtccatgcactgagctcataagatgct 93181063
00001740 ttcaccccacatttagggttaatcctttgcagaaatttcaggttatttta 00001789
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181062 ttcaccccacatttagggttaatcctttgcagaaatttcaggttatttta 93181013
00001790 ggccaagctgaagaaattagccatcacaatggtatcctaggaatctatta 00001839
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93181012 ggccaagctgaagaaattagccatcacaatggtatcctaggaatctatta 93180963
00001840 ctttcaatttatataatttaaaacagcaatctcaatgtttataataaaag 00001889
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
93180962 ctttcaatttatataatttaaaacagcaatctcaatgtttataataaaag 93180913
00001890 actcaactt 00001898
>>>>>>>> ||||||||| <<<<<<<<
93180912 actcaactt 93180904