Alignment of AK010745 and chr19:44234734-44241918
Click on links in the
frame to left to navigate through alignment. Matching bases in coding regions of
cDNA and genomic sequences are colored blue and capitalized. Matching bases in
UTR regions of cDNA and genomic sequences are colored red and capitalized. Light
blue (coding) or orange (UTR) bases mark the boundaries of gaps in either side
of the alignment (often splice sites).
cDNA AK010745
gAGAACCGGA AGAGCCTTGG GTCGGGCATG GCGGCGGCTG CGGAGGGCGT 50
CCCGGCGACG CGACGGGAGG AGCAGCCACC TCGAGATGAT GCTGCGGTGG 100
AGACAGCCGA GGAAGCAAAG GAGCCTGCCG AAGCTGACAT CAATGAGCTC 150
TGCCGGGACA TGTTCTCCAA AATGGCCACA TATTTGACTG GGGAACTGAC 200
AGCCACCAGT GAAGACTACA AACTCCTGGA AAATATGAAT AAGCTAACAA 250
GCTTGAAGTA CCTTGAAATG AAAGATATTG CTATCAACAT CAGCAGAAAC 300
CTGAAGGACT TAAACCAGAA ATATGCTGAA CTACAGCCAT ATCTGGACCA 350
GATCAACATG ATTGAGGAGC AGGTGGCAGC TCTGGAGCAG GCAGCCTACA 400
AGCTCGATGC TTATTCAAAA AAACTGGAAG CCAAGTACAA GAAGTTGGAG 450
AAGCGATGAG AATCGTGTTC ATGTGGCTCA AGTGTTTGTT AATATGGAAG 500
ATGTTTTATA ACCACTAAGT CCTGAGGCTG ACACATCATC AGAGCTCCTC 550
AGAAGAAAAT GGCTGGTTAA GCCCAAGGCC ACGCAATACT GGATGAACTG 600
GAGGGCCGTG GCTGCTCCGG AGTCTCCTCT GAGGTGGTAC CTCTCAGAAA 650
CTCACACCTG GGACTCCTCA CCGTTTACTT GAATGCTTCA TCATCCATCT 700
AAGATGGAGA CTGTAGAGTT CAGGGCATAC CTGGGTTTGC CAGTAGAGTC 750
CAGTGAGGGG ACCTGTTTTC CCTGGTATTG GGCATTTAGC ACGTCATCTT 800
CTAAAATGGC TGCTTTGTTT TGTTTGTTTT GTTTTCTACT GATGATATAG 850
TGAATTGTTA ACAAGATTCT AAATTAAAAA GG
Genomic chr19 (reverse strand):
tccttatttg aggtgtgact tgggcaagcc gatcaaagca aggaagctgt 44241969
gagcaagcgg cggggcgggg cacccgcggg gcgcacgcgc agatgccctt 44241919
AGAACCGGAA GcAGCCTTGG GTCGGGCATG GCGGCGGCTG CGGAGGGCGT 44241869
CCCGGCGACG CGACGGGAGG AGCAGCCACC TCGAGgtact accctgtgtg 44241819
gatggagatg cggcggctga tggtggggag gctaggtccg gatgcaggag 44241769
ccggtggacc tgtctaccgc agtcagggca ctgagacgaa agcctagctc 44241719
ctgagcatgg gaacggagtt ggcgtttcag gtgggcgggt gcgaggagaa 44241669
gggacgggat ggtggcagga ggagaacgaa ggcggcggga gcccaagtcg 44241619
ggagggactt aggaaccgtc cgctttggct ggattaggtc tggggatagg 44241569
acgtttactc ctcacctccc acccacacct tgccagATGA TGCTGCGGTG 44241519
GAGACAGCCG AGGAAGCAAA GGAGCCTGCC GAAGCTGACA TCAATGAGCT 44241469
CTGCCGGGAC ATGTTCTCCA AAATGGCCAC ATATTTGACT GGGGAACTGA 44241419
CAGgtgatac gcaacccctt ctggctgatc ccagctgtgt atttgcattt 44241369
gacttcacgg aaatctgaat ggtgctttag cagcctctgg tcagtccatg 44241319
gttgaatggg aggaaaggag ccgctctccc ccttgtcttt ccccagggaa 44241269
gcacaccaac cacttttgaa acacaaatct gcaggcctct tgtcataaag 44241219
gccaacaaca agaattccac actgttagtc cagaagtgcc ccgccggggg 44241169
agaagtatat tttaagcaga gttgtgaagg aaatggaagg gggggggtac 44241119
gtgaaacagt ccagttagta aaagagctgg agtaagcaag catttgatga 44241069
aacctgaagg ttagtctgaa gatttgctga cccacccgtg ggacacggtt 44241019
agattttagt tcagtgtccc tgcgtctgca tctgtgtctg tgtctgaggc 44240969
agagtcagaa agcagaggct ggaccttctg gggtgacata agaacttata 44240919
ctgtttcact gctctgtgaa aaaattactc tctctctctc tctctctctc 44240869
tctctgtgtg tgtgtgtgtg tgtggcttag aacgactttc gagagttggt 44240819
cctcttctta gaccacgtag gtcacgagga ccacgctctg atcttcaggc 44240769
ttggtagcaa gggccctctc acaggcccca ccccaggaaa tttttctgtg 44240719
agcccaattt gtgaaccagg atctatgagg aaaggtttag tagagaagtt 44240669
ggggggttgt aagtcgcaga ttttctctgc ctgatcgttc acttattttt 44240619
gagcaagaga gaccaagtaa caaaaatcca gatatatggg ttctccccac 44240569
aaattctgaa gtctatcgta acttacttag tagggctcta cttgaccagg 44240519
gttttgcagc cttttaagaa gactggataa tctggtttgt gtcaccactg 44240469
gctggtcctt tagtgtgatc ttgtggcctt tgctggttag cactgttctt 44240419
gttctcttgt ttttttttcc atttgctgta gtttagagat ggagttgtct 44240369
gacccagtgc ctcagaacta gtagggagtg ctgggctgag agggcgcaca 44240319
ctcctccgca cactcctccg aagagggaat gatggtttcc ttgtgtgttt 44240269
attatataaa cacttgtgtt actccaccca tacacattcc tctgctggct 44240219
tccaagtgtg tggcccttgt tttagagaga ttatgacttg atggcctcga 44240169
gaacaactgt ggaagagaga agaggaacag ttgtccagaa agtatcggga 44240119
atctgaggca gagtgaagat aagaagaatg gagagtttgg gcgtgagcac 44240069
aatgcagatg tagactttat ccggtactga gcaggctaag gtacttgttc 44240019
gtgtgggtag gaccaacaac caaaataggg aagctgacaa gaggaaccgt 44239969
gtttctgtgg gaaacgcagc tctggctcag ctgtttgtag ccgttactgg 44239919
aacacccaag tggtagtgca gaactgagac tgatcgttgc agaggagcca 44239869
cctgtgaggt ggcagggatg gagactacgc agaaagatca ctaaggaaga 44239819
gcttattggt ggacctcttc tggacctaga ttgacttctc aggaaatgga 44239769
gcagtttgta tggaatcgct gggcactgaa cccggggctt tgcataggca 44239719
aagcgattgc tttgtccagt gagctacatt tgcaccctta agtagatttt 44239669
tttctttctt tttttttttt tagataatta cttaaaattg taaagtttct 44239619
aagtgattat caaacagtta agccagtatt ctctctccat ggctgccgtg 44239569
cttacttgca cacatgcttt ttgcagagga aaaactgtca tttaccattt 44239519
actcactggg cctgcgtgca ttgtgcagct cgtgcataga ggctggagga 44239469
cagctgtggg agtcagtgct ctcctttcac cctgtgggtg ctggggcttg 44239419
attgtgcgca agcaagatga gacctgaatt ctgggcaggt agagggagga 44239369
ggcttcctgg aatgtgttgg cccatctaga taaatcggta aggtccactt 44239319
ccaatgagaa atctcgtccg aaaaaattaa agtagatagc agttgagaaa 44239269
gacccattga cctctagcct gcacatgtct acatgtcaca cacacacaga 44239219
cacacacaca cacagagttg atatatatac atgcatacat atctacatag 44239169
aaggtttata tctctagttg atgctgatat attaagatga gatcccccaa 44239119
attacacaca cacacatatt tataattttt ttttttttga gtcagggttt 44239069
ctctgtgtag ccctggctgt caaggaactc actctgtaga ccaggctggc 44239019
ctcgaactca ccaagatcca cctgcttctg cctctcaagt gttgggaatt 44238969
aagttgtgtg ccatcattac ttggcttata tattttttta atactgcaga 44238919
gatcccaaga tgatttcacc tctcttttct gagaccttga gtttaccttt 44238869
tctaactatg acactaactc ttctagacct cgcttagttg agtttgctga 44238819
ctgcagcctc ggtttctcct cagacctcca gggtagaggc taagtgtaaa 44238769
tgtcactgat ggaaagcaac ccgctctttt gacattccct gggatcctcc 44238719
cttgagcttc tgcacgtcct tcctaaaccc ctttgacctg aagttctgta 44238669
ttccagtaac tgcagacaaa tcaaaggtct cctgtcttct gtttatctta 44238619
aagCCACCAG TGAAGACTAC AAACTCCTGG AAAATATGAA TAAGCTAACA 44238569
AGCTTGAAGT ACCTTGAAAT GAAAGATATT GCTATCAACA TCAGCAGAAA 44238519
CCTGAAGGAC TTAAACCAGA AATgtgagta ctcgggtgca tccctcgaac 44238469
aggcactgct tgtatttcat gctccttagt gctcagagcc caagggcagg 44238419
gcacaaggat cgctgcctcc agccagctcc tgttgcagaa agcatgatcg 44238369
agcaagggga atttcttcca tcccgaaggt gggtcatttc tgcttctgca 44238319
ccttgctttt agatagtata ttcccagaag gagagtggac agacgagagt 44238269
ctagtgaatt tgatttaaca gtgaaatcaa caaagaacta ttttataagc 44238219
ccaaaatcta cacattgaaa atttaagacc agatgtcgca gcggaggcct 44238169
ttaatctcag cccttgggag acagaagcag gtaggtctct gtgagtttga 44238119
ggctggcctg gtctacaaaa tgagttccag aacagctagg gctacacaga 44238069
gaaacctggt cttgagaaaa aaaaaaaaaa aaaaaaaaag gaaagaaaat 44238019
actaatttaa tttagagtgc tctgaaaaat gcccttgata caaggactcc 44237969
ttgatgtggg catggccaag atgcagactc agtagcagaa ggattgctta 44237919
aggagtaaga actttgctgg gaaggaaaac tagaagtgga aatgttttgg 44237869
ctgggtcact tatggaccca gtaagtacct gtgtcttccc aggacgagcg 44237819
tctgccatct gcccaggtct ttgttaggct tatcagaaga aactctggct 44237769
tcctaacttc ctcctctttc tctatacttg ctgaccatat ttggacatgc 44237719
gggttgtttc tcaagATGCT GAACTACAGC CATATCTGGA CCAGATCAAC 44237669
ATGATTGAGG AGCAGGTGGC AGCTCTGGAG CAGGCAGCCT ACAAGCTCGA 44237619
TGCTTATTCA AAAAAACTGG gtaatcactt ttacgtctgt ctcaatcatt 44237569
tatgctttgt tttataaata ttccactgct gtgtttgtga acctcgtgag 44237519
tgtgtgatgc ttgcagaagt cagcaggggg catcggaccc cctggaattg 44237469
gagttacaag tggtcctgag ctgtcatgcc agcggtggga attgaacctg 44237419
ggtcctctgg aagaatggca agtgctctta accgttactg agcaacctct 44237369
ccagcccctt cgatttgata aagagtactt agcatggtga tacaacatct 44237319
gtaagcccag tactcccgaa gctgatgcag gaggattgta aatttgtatt 44237269
taggtcaggt tatacaatga gcatatctca aaaaaccaaa accaaataaa 44237219
tcaagcttaa ggaatttaaa tatgtagtaa gtagcatttt ctgtggttac 44237169
tgccttagaa gttctgtttg gaatgacctg catgtattgt atactttatt 44237119
cactacaagg tgattttttt tttttttgtc tttggttttg ttttgtgaga 44237069
catcgttttt ctgtgtatcc ctgactatcc tggaactgac tgtgtagacc 44237019
agccgcaaat tcccagagat ccacctggct ctgtctcccg agccctggga 44236969
gcacaaaggc cttcatcgat attcgaggca gcttttaaca gtttttgtta 44236919
aaaattccca cttttgaggg aagggaacgg cggtttaaga ggcaaagtaa 44236869
cttgcttaag gatacgaagc cggtaacgca cgcagaagag ccgtaagcca 44236819
gctgcctgtt ccagggccga gctctctgct gaggttcact atgctgaatg 44236769
acgaagcatc acttttctct aaagagctct tagtattgct tgcctgctct 44236719
ggctgttagc tacctggtaa agcttaatga acgtactctt tcctagatag 44236669
cttttacagg ttcttttatt ttttgctatt gcttctggtt aactgcttca 44236619
agagagtggt ttgtgggggc tggtgagatg gctcagtggg taagagcacc 44236569
cgactgctct tccgaaggtc cagagttcaa atcccagcaa ccacatggtg 44236519
gctcacaacc atctgtaaca agatctgact ccctcttctg gtgtgtctga 44236469
agacagctac agtgtactta catataataa taaataaatc ttaaaaaaaa 44236419
aaaaaaaaaa aaaaaagaga gtggtttgta agtcaccatt tagcagagta 44236369
gtgatcaaca gtcagtttca ctacttaccg ttacatttag taatctttgc 44236319
tgtgaacctc accatataga aggcagcaca ccaaggggtt ttgagatttt 44236269
aaaagacaaa aaaggtgtgg tggcatatgc ctgtaattcc ctgggaggtg 44236219
aggcaggaag attgggagtt caagactagc tacccaggct gttagaaaat 44236169
ttgttacaag aaaaaacaaa tcacagtact aggcttattt gacaacgttt 44236119
taaatctatt caggcctttg tatctttcca aattgctttc ctgaagtgaa 44236069
agataccaat aagaacataa ggggctggag agatggctca gcactaactg 44236019
ttcttccaga ggtcctgagt tcccagcaac cacatggtgc tcgcaaccat 44235969
ttttaatggg atttgatgcc ctcttctggt gtgtctgaag agagcgacaa 44235919
tgttctcaca tgcaataaat aaataaacaa acaaacaaac aaacaaataa 44235869
ataagaatat aaaacgacca ggaatgaagc tcaattgacg gatggcccac 44235819
ttgccattca tgatgtccta ggattaacaa cacccaagtc ctcatcacca 44235769
ggacactaaa gatgcccagt cctgggtacc tatccagtgc tggacaaaca 44235719
gggaatggac atacatgtct gtaattccag cgctgaggat gtggaggaag 44235669
gacagttaga aggccaaggt cgtctgtggc tgcatcgtga gttcgaagcc 44235619
agcctggggt ttgtgagagc tgtgtaggct gcatggatgc cgggtagggg 44235569
taggaagtag agagttgctc tgggctggct ccagaggcta cctgggatcg 44235519
ttcctggaag gttagtttct aaagtgtagt aaggctgcca gtagggccag 44235469
tgccagtggg tcctggttca ttctgtctga gctatctgag cgtgtgttat 44235419
tgatacagtt agcatttagt gtgtgtggtc tgggctcaca gtcagtgttt 44235369
gtgtttgact ccttgaagtt gtgcggaccc gtgatctcct tatttgtgca 44235319
gatgacgaga ctgaagttgc tgccttaaga atataatggg catatttgaa 44235269
cttgcttgaa aaatctaact aaaaggtatc tttttgagca ctggggttaa 44235219
aagatacaat tcctgttctt ccccaaatag AAGCCAAGTA CAAGAAGTTG 44235169
GAGAAGCGAT GAGAATCGTG TTCATGTGGC TCAAGTGTTT GTTAATATGG 44235119
AAGATGTTTT ATAACCACTA AGTCCTGAGG CTGACACATC ATCAGAGCTC 44235069
CTCAGAAGAA AATGGCTGGT TAAGCCCAAG GCCACGCAAT ACTGGATGAA 44235019
CTGGAGGGCC GTGGCTGCTC CGGAGTCTCC TCTGAGGTGG TACCTCTCAG 44234969
AAACTCACAC CTGGGACTCC TCACCGTTTA CTTGAATGCT TCATCATCCA 44234919
TCTAAGATGG AGACTGTAGA GTTCAGGGCA TACCTGGGTT TGCCAGTAGA 44234869
GTCCAGTGAG GGGACCTGTT TTCCCTGGTA TTGGGCATTT AGCACGTCAT 44234819
CTTCTAAAAT GGCTGCTTTG TTTTGTTTGT TTTGTTTTCT ACTGATGATA 44234769
TAGTGAATTG TTAACAAGAT TCTAAATTAA AAAGGaaaac aaaacaaatg 44234719
tgggtttttt ggtttttgtt ttgcaactta ttactatctg tgtggtgata 44234669
atttgccttt ccataactgc caataacaga aagtc
Side by Side Alignment
00000002 agaaccggaag.agccttgggtcgggcatggcggcggctgcggagggcgt 00000050
>>>>>>>> ||||||||||| |||||||||||||||||||||||||||||||||||||| <<<<<<<<
44241918 agaaccggaagcagccttgggtcgggcatggcggcggctgcggagggcgt 44241869
00000051 cccggcgacgcgacgggaggagcagccacctcgag 00000085
>>>>>>>> ||||||||||||||||||||||||||||||||||| <<<<<<<<
44241868 cccggcgacgcgacgggaggagcagccacctcgag 44241834
00000086 atgatgctgcggtggagacagccgaggaagcaaaggagcctgccgaagct 00000135
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44241532 atgatgctgcggtggagacagccgaggaagcaaaggagcctgccgaagct 44241483
00000136 gacatcaatgagctctgccgggacatgttctccaaaatggccacatattt 00000185
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44241482 gacatcaatgagctctgccgggacatgttctccaaaatggccacatattt 44241433
00000186 gactggggaactgacag 00000202
>>>>>>>> ||||||||||||||||| <<<<<<<<
44241432 gactggggaactgacag 44241416
00000203 ccaccagtgaagactacaaactcctggaaaatatgaataagctaacaagc 00000252
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44238615 ccaccagtgaagactacaaactcctggaaaatatgaataagctaacaagc 44238566
00000253 ttgaagtaccttgaaatgaaagatattgctatcaacatcagcagaaacct 00000302
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44238565 ttgaagtaccttgaaatgaaagatattgctatcaacatcagcagaaacct 44238516
00000303 gaaggacttaaaccagaaat 00000322
>>>>>>>> |||||||||||||||||||| <<<<<<<<
44238515 gaaggacttaaaccagaaat 44238496
00000323 atgctgaactacagccatatctggaccagatcaacatgattgaggagcag 00000372
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44237703 atgctgaactacagccatatctggaccagatcaacatgattgaggagcag 44237654
00000373 gtggcagctctggagcaggcagcctacaagctcgatgcttattcaaaaaa 00000422
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44237653 gtggcagctctggagcaggcagcctacaagctcgatgcttattcaaaaaa 44237604
00000423 actgg 00000427
>>>>>>>> ||||| <<<<<<<<
44237603 actgg 44237599
00000428 aagccaagtacaagaagttggagaagcgatgagaatcgtgttcatgtggc 00000477
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44235188 aagccaagtacaagaagttggagaagcgatgagaatcgtgttcatgtggc 44235139
00000478 tcaagtgtttgttaatatggaagatgttttataaccactaagtcctgagg 00000527
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44235138 tcaagtgtttgttaatatggaagatgttttataaccactaagtcctgagg 44235089
00000528 ctgacacatcatcagagctcctcagaagaaaatggctggttaagcccaag 00000577
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44235088 ctgacacatcatcagagctcctcagaagaaaatggctggttaagcccaag 44235039
00000578 gccacgcaatactggatgaactggagggccgtggctgctccggagtctcc 00000627
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44235038 gccacgcaatactggatgaactggagggccgtggctgctccggagtctcc 44234989
00000628 tctgaggtggtacctctcagaaactcacacctgggactcctcaccgttta 00000677
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44234988 tctgaggtggtacctctcagaaactcacacctgggactcctcaccgttta 44234939
00000678 cttgaatgcttcatcatccatctaagatggagactgtagagttcagggca 00000727
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44234938 cttgaatgcttcatcatccatctaagatggagactgtagagttcagggca 44234889
00000728 tacctgggtttgccagtagagtccagtgaggggacctgttttccctggta 00000777
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44234888 tacctgggtttgccagtagagtccagtgaggggacctgttttccctggta 44234839
00000778 ttgggcatttagcacgtcatcttctaaaatggctgctttgttttgtttgt 00000827
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44234838 ttgggcatttagcacgtcatcttctaaaatggctgctttgttttgtttgt 44234789
00000828 tttgttttctactgatgatatagtgaattgttaacaagattctaaattaa 00000877
>>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<<
44234788 tttgttttctactgatgatatagtgaattgttaacaagattctaaattaa 44234739
00000878 aaagg 00000882
>>>>>>>> ||||| <<<<<<<<
44234738 aaagg 44234734